Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g02216 ATGGCTTCTCTTGGCAACCCGAAAAGTTGGGTTCCATACATGAACAACAAAGACTGTTCTCAAGGGTTTTGTAGCTTGTATTGTCCACAGTGGTGTTATGTAATCTACCCTCCTCCTCCTCCCTTTGAATTTCCCGCTGATGATTCAAGTCCAAATTTCTCCCCTCTAGTAATTGCAGTGATTGGGGTCTTGGCCAGTGCTTTTCTTCTTGTGAGTTACTATACCTTAATATCCAAGTACTGTGGCAGCAGAGAATCTTCAGAAAGCGAAGACCACGAAGAAAACGTTGAATTGGAAGAGGATCACAACCCTTCGCTCCACGAGCCTTGGCATACTCCAACCATTGGGTTAGATGAGGCTCTGATTAAGTCCATAACAGTTTGCAAGTACAAGAAAGGCGATGGGTTGGTTGAGGTGACAGATTGCCCTGTTTGTCTCAGCGAGTTTGAAGATAATGAAAGTGTTAGACTCTTGCCTAAATGCAACCATGCTTTTCACCTCCCTTGCATTGACACCTGGCTCAAATCTCACTCCAGTTGCCCTCTATGTCGTGCCAGCGTATTCACATTCAATGCTGCAGCACTTCATGTGGCTACCCCAGTCATAGAATTGGGGAGTGAAACTTCAGAAAACCAACATGCAGATGAAAATGTTGCTGTTACTACAAGGGACAGTGACTTGGATGCTGTGGAGGGAGAAGTCACACACGGTGGAGCAGTTCCAAAGACTGCATTGCGTGCTTTAAGTGATCTAGGAAATTTGAGGGGAAGCCATAGTGTAATCGAGATTAGAGACGAAGAGTATGACTCCATTAGAAGGACACTTTCTATGGATCATTCATTTCAAAGGGGTGGTGGTCTTTCAGTGGCTGATGTTCTCGTTTTGAATCAAGAGCATGAAGGATGTTCCAATGGGGCTGGTCCTTCAAAGGGATCAAGAGGTGAAAGTAGCAAGTCTAGCTATAGAAGAAGGGTTTTGCATTGTGTTTTGAGTCCAATTACAATGAAGAGATCATTTTCTAGTGGAAGATTCTCCCTTAGCAGAAATGGCTGA 1053 0.4435 MASLGNPKSWVPYMNNKDCSQGFCSLYCPQWCYVIYPPPPPFEFPADDSSPNFSPLVIAVIGVLASAFLLVSYYTLISKYCGSRESSESEDHEENVELEEDHNPSLHEPWHTPTIGLDEALIKSITVCKYKKGDGLVEVTDCPVCLSEFEDNESVRLLPKCNHAFHLPCIDTWLKSHSSCPLCRASVFTFNAAALHVATPVIELGSETSENQHADENVAVTTRDSDLDAVEGEVTHGGAVPKTALRALSDLGNLRGSHSVIEIRDEEYDSIRRTLSMDHSFQRGGGLSVADVLVLNQEHEGCSNGAGPSKGSRGESSKSSYRRRVLHCVLSPITMKRSFSSGRFSLSRNG* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g02216 350 MobiDBLite consensus disorder prediction 301 320 - -
Phac2g02216 350 Pfam Ring finger domain 141 184 IPR001841 -
Phac2g02216 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 191 IPR013083 -
Phac2g02216 350 PANTHER RING-H2 FINGER PROTEIN ATL16 41 324 IPR044600 GO:0016567|GO:0016740
Phac2g02216 350 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Phac2g02216 350 FunFam RING-H2 finger protein ATL54 117 190 - -
Phac2g02216 350 CDD RING-H2_EL5-like 141 184 - -
Phac2g02216 350 SUPERFAMILY RING/U-box 122 189 - -
Phac2g02216 350 SMART ring_2 142 183 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g02216 Phac-Chr2 23882579 23884545 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g02216 1 319 C3H Transcription Factor Family AT3G03550 42.730 6.76e-75 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g02216 - - gmx:100792267 575.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac2g02216 2 23882579 23884545 Phac2g02216 2 23882579 23884545 ECH