Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g02211 ATGGGTAAGAAGAAACCCAAGGACCCGCAACAAACCTCTCAAACCGACACTGTTTCATCCCCTTCCAGCATTTTCGACAAGCTATTCGGCAACGCGCCGGAACAGGGCACCGCAACCGCCGCTCTATTTTCCGACGACAACCCCTTTCGGAGAAAACCTGCTTCACTTTCCAACACAACCAACCACGCTCAAATCCCTTACAACGGCGACGCCGAGAATCGCGATGCCAGCGACGAGAAGAAGCGGAAGAGGAACAGAGAGATAAGCCCAGCCCTTGATTCAGTTCCTCTAACCGAAGCTTTGAAGAAATCGGAGAAGAGGAAACGCGGTACCCATGAAGGAAGAGAAGGAGACCTTGATTTGGGTGCAGAAGCAATTGGGAAAAGGAAGAGGAAAAGGGATGAAGTTGAAAGAGAGTGGGAGGAGAAGAGATATGGGCCGGTGGAGAAAGTTGAAAAGGAAGGGGTTGAGAATAAAACTGTTGGGAACAAGAGGAAGACGTTGGATGATCCAGCTGATACGATGGTTTCAAAGGAGGGTTTTGATGACGAGGATAAGCTTCTAAGGACTGTCTTTGTTGGGAATTTGCCTCTCAAGGTGAAAAAGAAGATTCTGTTGAAGGAGTTTAAGAAGTTTGGTGAGGTAGAGTCTGTGAGGATTCGTTCTGTTCCAATACAAGATACCAAGAAACCTAGAAAGGGAGCTATCCTTGCGAAGAAAATAAATGATGCTGCTGATAGTGTACATGCATACATTGTTTTCAAAACCGAGCAATCGGCACAGGCTTCTTTGTCACACAACATGTCACTGGTTGAAGGAAACCACATTCGTGTTGATAGGGCTTGTCCACCCCGCAAGAAACATAAAGGGGAAAGTGTTCCTCTTTATGACAACAAGAGAACTGTTTTTGTGGGCAACCTCCCATTCGATGTGAAGGATGAAGAGCTTTATCAGTTATTTTGTGGTATATCCAACCTGGAATCAAGTGTAGAAGCTGTCAGAGTTGTTCGAGATCCTCATCTTAATGTTGGAAAGGGTATTGCTTATGTGCTATTTAAATCAAAGGAAGCTGCTAAATTTGTTGTTAAGAAAAGGAAGTTGAAACTTCGAGACCGAGAGTTGAGACTCTCTCATGCTAAAGCAGATGCTACCCCATCTAAAAGGCCAAACCCATCATCAACACAAGCTTCTACCCCATCTAAACGGCCAAACCCATCATCAACACAAGCTCCTGGTACTCCTGCAAAGAAATTTTCTGTGGCTTCACGGTCTCCTTCGAGCATTATTAACAGGTCAAACAGAAAAACCAATGCATCTTATCAGGGTCTACGTGCAACCAAATCAGATGTGCACAAGAAAACCCAGGGTGGAGAAAAGCCAAAAGAACGCCAGACAAAGAGGCCTTCAGTGGCTGCCAGAAAGGCTAAAGCAAAAATGCACATGGAGAGTGGAGCACCAAAACAAGCAGGGATAAAACGCAAGTTTGATAGTCGTACTCCAGACAGTTCCCTGCGTATTAAGAAAGTAAAAAAGAACAGGTAG 1542 0.4514 MGKKKPKDPQQTSQTDTVSSPSSIFDKLFGNAPEQGTATAALFSDDNPFRRKPASLSNTTNHAQIPYNGDAENRDASDEKKRKRNREISPALDSVPLTEALKKSEKRKRGTHEGREGDLDLGAEAIGKRKRKRDEVEREWEEKRYGPVEKVEKEGVENKTVGNKRKTLDDPADTMVSKEGFDDEDKLLRTVFVGNLPLKVKKKILLKEFKKFGEVESVRIRSVPIQDTKKPRKGAILAKKINDAADSVHAYIVFKTEQSAQASLSHNMSLVEGNHIRVDRACPPRKKHKGESVPLYDNKRTVFVGNLPFDVKDEELYQLFCGISNLESSVEAVRVVRDPHLNVGKGIAYVLFKSKEAAKFVVKKRKLKLRDRELRLSHAKADATPSKRPNPSSTQASTPSKRPNPSSTQAPGTPAKKFSVASRSPSSIINRSNRKTNASYQGLRATKSDVHKKTQGGEKPKERQTKRPSVAARKAKAKMHMESGAPKQAGIKRKFDSRTPDSSLRIKKVKKNR* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g02211 513 CDD RRM2_RBM34 301 377 IPR034221 -
Phac2g02211 513 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 300 381 IPR000504 GO:0003723
Phac2g02211 513 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 302 375 IPR000504 GO:0003723
Phac2g02211 513 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 191 233 IPR000504 GO:0003723
Phac2g02211 513 Gene3D - 295 388 IPR012677 -
Phac2g02211 513 MobiDBLite consensus disorder prediction 11 26 - -
Phac2g02211 513 MobiDBLite consensus disorder prediction 1 142 - -
Phac2g02211 513 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 280 437 - -
Phac2g02211 513 MobiDBLite consensus disorder prediction 446 507 - -
Phac2g02211 513 MobiDBLite consensus disorder prediction 51 67 - -
Phac2g02211 513 MobiDBLite consensus disorder prediction 72 89 - -
Phac2g02211 513 MobiDBLite consensus disorder prediction 372 513 - -
Phac2g02211 513 SUPERFAMILY RNA-binding domain, RBD 182 289 IPR035979 GO:0003676
Phac2g02211 513 SMART rrm1_1 301 377 IPR000504 GO:0003723
Phac2g02211 513 SMART rrm1_1 190 279 IPR000504 GO:0003723
Phac2g02211 513 Gene3D - 185 289 IPR012677 -
Phac2g02211 513 SUPERFAMILY RNA-binding domain, RBD 296 391 IPR035979 GO:0003676
Phac2g02211 513 CDD RRM1_RBM34 189 279 - -
Phac2g02211 513 MobiDBLite consensus disorder prediction 386 444 - -
Phac2g02211 513 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 283 IPR000504 GO:0003723
Phac2g02211 513 MobiDBLite consensus disorder prediction 99 142 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g02211 191 364 Eukaryotic Initiation Factors Gene Family AT1G71770 27.119 1.04e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g02211 K14837 - gmx:100784494 742.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac2g02211 2 23777512 23782851 Phac2g02211 2 23777512 23782851 ECH