Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g02202 ATGAGAGGGAAACAGCAACGTGGAGCGGAAGACCCGTTCTTCGCTCCAAACCCTTCTGCCACTCAGCACAATTTGGGCTCACCAAACCACCGCAGGCCCGCACGTAGGAACCGAGGCCCACACCAACCGAACTTGAAATACCGTGTCGTGAACAAGCCCGAAGCGGTTTCTTCCTCCAACTCTCACTCCGTTGAGGATGCCAACGTGGACGTTACTGTCGCATGCCTAAATCTCCATGGCGAGGACGCTGGCGGCGCCTCCGAGCTCAACATCGTTGACGGCATCGACCGTGTGGCTTGTTCCAGCAAGGTCGAGGAAGGAGGCGGCAATGATGATGATGATGATGGTGGTGGTGGTGGTGATAATGACGATATTCAGACCAGGCTTGATAAGCTGCTCTGTGAAATTGAGGAACCTGATTTGTCCGAGGAGCAGATCAGAATCAATGATCAATTGCAACAAGATGAGATACATATACACATTGATGTTTTGGGTGAAATTGCCATCACTGCTAAGTTGAACTCTCTTAATCGACTTGAGACTGTAAGCAGCAGTTCAGATGAATTCTTATACACTTTCAAAGTCCAATATCTTCCACCGATTGTTTTGACTTGTTTATTACCTAAGTCGTACCCTAGCCACCAGCCACCAATTTTTACACTCTCTGTTAAGTGGTTGGAACCTGTGAAGATTCTGAGACTGTGCTCCAAGTTGGATTCAATATGGGCTGAACAACAAGGGCAGGAAGTAATTTACCCTTGGGTAGAATGGTTGCATGGTTCTTCTCTTTCTCATTTGGGATTTGATGAGGAAATCACACTTGGGCCTTATGGCATGAACGTTGTCCAGGATGAGCATGTTGTTTCAGGTGCTGAATGCATTGATATGGATATTCCTTTTTTACGAAATTACAATGATCAGAGACACAATGAGAACTTCCTCAAAGAATTACATCAATGTAACATTTGCTTTGGTGAATATACAGGTTCTGAGTTTATCCGGTTACCATGTATGCATTTTTTTTGCCTCAAGTGTTTGCAGACCTTTGCCCAGATACATGTAAAGGAAGGCACTGTTAGTAATCTTCAATGTCCTGAAGCAAAATGTACAGTCATGATTCCACCTGGCCTTCTAAAGCACTTGCTAGATGACAAAGATTATGAGCGCTGGGAATCCATGATGTTGGAAAAAACACTTGCATCAATGTCTGATATTGTTTATTGTCCAAGATGTGAAACCCCCTGTATAGAGGATGAAGACCAGCATGCTCAGTGCCCAAAGTGTTATTTTAGCTTTTGTACCCTTTGCAGGGAACGACGACACGTTGGCATAGCATGCATGAGTCTAGATATGAAGCTTCAGATTTTGCAGGACCGTCAAAATTCATCCCATTTAAAGGAAGATCAAAAGCGTAGGGAACGTGAAAAGATTAATGAAATGCTCAGTATGAAAGAAATTCATCGTGATTCCAAGCAATGCCCTTCTTGTGACATGGCAATTTCTCGAACTGAGGGTTGTAACAAAATGAAATGTGGTAATTGTGAACAATACTTCTGTTACCGCTGCAACAAGACAATTGATCCATCAGATCCGTATGGTCATTTCAGGGATGGTTCATGTGAGCTGTTTCCACGAGAAATGGTTGAGTCCTGGCAAGAGCGAATAAATCATCGCCAGGCAGTAGGACAATTACAGGCTGAGCTTTTTCCTCAACGAGGCTTGACATGTCCTAATTGTCGTCAATTTAATGCAAAGATTGGAAATAATAATCACTTGTTTTGCTGGGCATGCCAAAGCCACTACTGCTACTTGTGCAAAGAGATTGTCAGGCGCGGCACCAAGCATTATGGACCCAAGGGCTGCAAACAGCATTCCGACGGATAG 1884 0.4427 MRGKQQRGAEDPFFAPNPSATQHNLGSPNHRRPARRNRGPHQPNLKYRVVNKPEAVSSSNSHSVEDANVDVTVACLNLHGEDAGGASELNIVDGIDRVACSSKVEEGGGNDDDDDGGGGGDNDDIQTRLDKLLCEIEEPDLSEEQIRINDQLQQDEIHIHIDVLGEIAITAKLNSLNRLETVSSSSDEFLYTFKVQYLPPIVLTCLLPKSYPSHQPPIFTLSVKWLEPVKILRLCSKLDSIWAEQQGQEVIYPWVEWLHGSSLSHLGFDEEITLGPYGMNVVQDEHVVSGAECIDMDIPFLRNYNDQRHNENFLKELHQCNICFGEYTGSEFIRLPCMHFFCLKCLQTFAQIHVKEGTVSNLQCPEAKCTVMIPPGLLKHLLDDKDYERWESMMLEKTLASMSDIVYCPRCETPCIEDEDQHAQCPKCYFSFCTLCRERRHVGIACMSLDMKLQILQDRQNSSHLKEDQKRREREKINEMLSMKEIHRDSKQCPSCDMAISRTEGCNKMKCGNCEQYFCYRCNKTIDPSDPYGHFRDGSCELFPREMVESWQERINHRQAVGQLQAELFPQRGLTCPNCRQFNAKIGNNNHLFCWACQSHYCYLCKEIVRRGTKHYGPKGCKQHSDG* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g02202 627 FunFam RBR-type E3 ubiquitin transferase 461 570 - -
Phac2g02202 627 CDD BRcat_RBR_RNF14 399 450 - -
Phac2g02202 627 MobiDBLite consensus disorder prediction 1 49 - -
Phac2g02202 627 CDD Rcat_RBR_RNF14 478 543 IPR047548 GO:0008270
Phac2g02202 627 ProSitePatterns Zinc finger RING-type signature. 337 346 IPR017907 -
Phac2g02202 627 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 315 403 IPR013083 -
Phac2g02202 627 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 163 535 IPR031127 GO:0004842|GO:0016567
Phac2g02202 627 SUPERFAMILY RING/U-box 479 535 - -
Phac2g02202 627 ProSiteProfiles RWD domain profile. 165 265 IPR006575 GO:0005515
Phac2g02202 627 SMART ring_2 576 605 IPR001841 -
Phac2g02202 627 SMART ring_2 408 496 IPR001841 -
Phac2g02202 627 SMART ring_2 320 367 IPR001841 -
Phac2g02202 627 CDD RING-HC_ITT1-like 314 373 - -
Phac2g02202 627 SUPERFAMILY RING/U-box 315 399 - -
Phac2g02202 627 SUPERFAMILY UBC-like 162 269 IPR016135 -
Phac2g02202 627 Gene3D - 462 568 - -
Phac2g02202 627 SMART ibrneu5 388 446 IPR002867 GO:0008270
Phac2g02202 627 SMART ibrneu5 475 540 IPR002867 GO:0008270
Phac2g02202 627 FunFam RBR-type E3 ubiquitin transferase 315 399 - -
Phac2g02202 627 MobiDBLite consensus disorder prediction 102 124 - -
Phac2g02202 627 SUPERFAMILY RING/U-box 571 624 - -
Phac2g02202 627 SMART RWD2001b 143 265 IPR006575 GO:0005515
Phac2g02202 627 SUPERFAMILY RING/U-box 388 450 - -
Phac2g02202 627 ProSiteProfiles Zinc finger RING-type profile. 320 368 IPR001841 -
Phac2g02202 627 Gene3D Ubiquitin Conjugating Enzyme 135 266 IPR016135 -
Phac2g02202 627 ProSiteProfiles TRIAD supradomain profile. 316 546 IPR044066 -
Phac2g02202 627 Pfam IBR domain, a half RING-finger domain 388 446 IPR002867 GO:0008270
Phac2g02202 627 Pfam IBR domain, a half RING-finger domain 483 526 IPR002867 GO:0008270
Phac2g02202 627 Pfam RWD domain 160 259 IPR006575 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g02202 Phac-Chr2 23662123 23668109 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g02202 319 522 ARIADNE family AT2G31780 24.645 4.91e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g02202 K11971 - gmx:100500662 1026.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac2g02202 2 23662123 23668109 Phac2g02202 2 23662123 23668109 ECH