Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g02201 ATGAGAGGGAAACAGCAACGTGGAGCGGAAGACCCGTTCTTCGCTCCAAACCCTTCTGCCACTCAGCACAATTTGGGCTCACCAAACCACCGCAGGCCCGCACGTAGGAACCGAGGCCCACACCAACCGAACTTGAAATACCGTGTCGTGAACAAGCCCGAAGCGGTTTCTTCCTCCAACTCTCACTCCGTTGAGGATGCCAACGTGGACGTTACTGTCGCATGCCTAAATCTCCATGGCGAGGACGCTGGCGGCGCCTCCGAGCTCAACATCGTTGACGGCATCGACCGTGTGGCTTGTTCCAGCAAGGTCGAGGAAGGAGGCGGCAATGATGATGATGATGATGGTGGTGGTGGTGGTGATAATGACGATATTCAGACCAGGCTTGATAAGCTGCTCTGTGAAATTGAGGAACCTGATTTGTCCGAGGAGCAGATCAGAATCAATGATCAATTGCAACAAGATGAGATACTTGTGGTGGAGTCAATTTATGGAGAAAATGTTTTCGGCCTTGAGACATGGAAAGGCTTGCGTTGTTTTCAGATACATATACACATTGATGTTTTGGGTGAAATTGCCATCACTGCTAAGTTGAACTCTCTTAATCGACTTGAGACTGTAAGCAGCAGTTCAGATGAATTCTTATACACTTTCAAAGTCCAATATCTTCCACCGATTGTTTTGACTTGTTTATTACCTAAGTCGTACCCTAGCCACCAGCCACCAATTTTTACACTCTCTGTTAAGTGGTTGGAACCTGTGAAGATTCTGAGACTGTGCTCCAAGTTGGATTCAATATGGGCTGAACAACAAGGGCAGGAAGTAATTTACCCTTGGGTAGAATGGTTGCATGGTTCTTCTCTTTCTCATTTGGGATTTGATGAGGAAATCACACTTGGGCCTTATGGCATGAACGTTGTCCAGGATGAGCATGTTGTTTCAGGTGCTGAATGCATTGATATGGATATTCCTTTTTTACGAAATTACAATGATCAGAGACACAATGAGAACTTCCTCAAAGAATTACATCAATGTAACATTTGCTTTGGTGAATATACAGGTTCTGAGTTTATCCGGTTACCATGTATGCATTTTTTTTGCCTCAAGTGTTTGCAGACCTTTGCCCAGATACATGTAAAGGAAGGCACTGTTAGTAATCTTCAATGTCCTGAAGCAAAATGTACAGTCATGATTCCACCTGGCCTTCTAAAGCACTTGCTAGATGACAAAGATTATGAGCGCTGGGAATCCATGATGTTGGAAAAAACACTTGCATCAATGTCTGATATTGTTTATTGTCCAAGATGTGAAACCCCCTGTATAGAGGATGAAGACCAGCATGCTCAGTGCCCAAAGTGTTATTTTAGCTTTTGTACCCTTTGCAGGGAACGACGACACGTTGGCATAGCATGCATGAGTCTAGATATGAAGCTTCAGATTTTGCAGGACCGTCAAAATTCATCCCATTTAAAGGAAGATCAAAAGCGTAGGGAACGTGAAAAGATTAATGAAATGCTCAGTATGAAAGAAATTCATCGTGATTCCAAGCAATGCCCTTCTTGTGACATGGCAATTTCTCGAACTGAGGGTTGTAACAAAATGAAATGTGGTAATTGTGAACAATACTTCTGTTACCGCTGCAACAAGACAATTGATCCATCAGATCCGTATGGTCATTTCAGGGATGGTTCATGTGAGCTGTTTCCACGAGAAATGGTTGAGTCCTGGCAAGAGCGAATAAATCATCGCCAGGCAGTAGGACAATTACAGGCTGAGCTTTTTCCTCAACGAGGCTTGACATGTCCTAATTGTCGTCAATTTAATGCAAAGATTGGAAATAATAATCACTTGTTTTGCTGGGCATGCCAAAGCCACTACTGCTACTTGTGCAAAGAGATTGTCAGGCGCGGCACCAAGCATTATGGACCCAAGGGCTGCAAACAGCATTCCGACGGATAG 1959 0.4416 MRGKQQRGAEDPFFAPNPSATQHNLGSPNHRRPARRNRGPHQPNLKYRVVNKPEAVSSSNSHSVEDANVDVTVACLNLHGEDAGGASELNIVDGIDRVACSSKVEEGGGNDDDDDGGGGGDNDDIQTRLDKLLCEIEEPDLSEEQIRINDQLQQDEILVVESIYGENVFGLETWKGLRCFQIHIHIDVLGEIAITAKLNSLNRLETVSSSSDEFLYTFKVQYLPPIVLTCLLPKSYPSHQPPIFTLSVKWLEPVKILRLCSKLDSIWAEQQGQEVIYPWVEWLHGSSLSHLGFDEEITLGPYGMNVVQDEHVVSGAECIDMDIPFLRNYNDQRHNENFLKELHQCNICFGEYTGSEFIRLPCMHFFCLKCLQTFAQIHVKEGTVSNLQCPEAKCTVMIPPGLLKHLLDDKDYERWESMMLEKTLASMSDIVYCPRCETPCIEDEDQHAQCPKCYFSFCTLCRERRHVGIACMSLDMKLQILQDRQNSSHLKEDQKRREREKINEMLSMKEIHRDSKQCPSCDMAISRTEGCNKMKCGNCEQYFCYRCNKTIDPSDPYGHFRDGSCELFPREMVESWQERINHRQAVGQLQAELFPQRGLTCPNCRQFNAKIGNNNHLFCWACQSHYCYLCKEIVRRGTKHYGPKGCKQHSDG* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g02201 652 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 203 560 IPR031127 GO:0004842|GO:0016567
Phac2g02201 652 MobiDBLite consensus disorder prediction 1 49 - -
Phac2g02201 652 FunFam RBR-type E3 ubiquitin transferase 486 595 - -
Phac2g02201 652 SUPERFAMILY RING/U-box 596 649 - -
Phac2g02201 652 FunFam RBR-type E3 ubiquitin transferase 340 424 - -
Phac2g02201 652 CDD Rcat_RBR_RNF14 503 568 IPR047548 GO:0008270
Phac2g02201 652 SUPERFAMILY UBC-like 149 284 IPR016135 -
Phac2g02201 652 MobiDBLite consensus disorder prediction 102 124 - -
Phac2g02201 652 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 340 428 IPR013083 -
Phac2g02201 652 Pfam RWD domain 151 284 IPR006575 GO:0005515
Phac2g02201 652 Gene3D Ubiquitin Conjugating Enzyme 142 291 IPR016135 -
Phac2g02201 652 Gene3D - 487 593 - -
Phac2g02201 652 ProSiteProfiles Zinc finger RING-type profile. 345 393 IPR001841 -
Phac2g02201 652 CDD BRcat_RBR_RNF14 424 475 - -
Phac2g02201 652 SMART ring_2 345 392 IPR001841 -
Phac2g02201 652 SMART ring_2 433 521 IPR001841 -
Phac2g02201 652 SMART ring_2 601 630 IPR001841 -
Phac2g02201 652 SMART RWD2001b 155 290 IPR006575 GO:0005515
Phac2g02201 652 ProSitePatterns Zinc finger RING-type signature. 362 371 IPR017907 -
Phac2g02201 652 CDD RING-HC_ITT1-like 339 398 - -
Phac2g02201 652 ProSiteProfiles TRIAD supradomain profile. 341 571 IPR044066 -
Phac2g02201 652 SUPERFAMILY RING/U-box 340 424 - -
Phac2g02201 652 SMART ibrneu5 500 565 IPR002867 GO:0008270
Phac2g02201 652 SMART ibrneu5 413 471 IPR002867 GO:0008270
Phac2g02201 652 SUPERFAMILY RING/U-box 413 475 - -
Phac2g02201 652 Pfam IBR domain, a half RING-finger domain 508 551 IPR002867 GO:0008270
Phac2g02201 652 Pfam IBR domain, a half RING-finger domain 413 471 IPR002867 GO:0008270
Phac2g02201 652 ProSiteProfiles RWD domain profile. 155 290 IPR006575 GO:0005515
Phac2g02201 652 SUPERFAMILY RING/U-box 504 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g02201 Phac-Chr2 23662123 23668109 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g02201 344 547 ARIADNE family AT2G31780 24.645 5.41e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g02201 K11971 - gmx:100500662 1087.02