LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac2g02197	ATGACATTGGTTATCAGAGAGAGAAGACACAAGCAAGCTCTAAGGCTTTCATTACCAAAATCTCCTTCAATTTCAATTCCATCACATTCAGATTTCCCTCACCAAATCCACGTACCAGCAGTGCTCACATCCCCGTCTTCCCATGTAGACTCCTCTCCAGGCATTATCAAGGACCTTTCGGACCTTGAGAAGCTTTCAGTTCTTGGCCATGGCAATGGTGGCACAGTCTACAAAGTTTATCACAATAGTAGCCGCTCCTTCTACGCCTTGAAAGTGCTACGCTTGAATGAGAACGATCTTGGCATTCGCCAACCCGCTACACTAGAGGCTGAGATTCTGAAGCGAGTGGATTCACCGTATATAGTAAGGTGTCATGCTGTTTTTGACAATGGTAATAGCAACAATAATGATGGTGACAAGGGAGGTGACATTAGCTTTGTGATGGAATACATGGAAGGAGGGTCGTTGCATGATGTGTTGAGAGAGCATCATAGACTGCCAGAAGAGGTTATCTCAGTTTTGGCAAGGCGTGTTTTGGAAGGACTTGGGTATCTACATGGCATGAACATTGTGCATAGAGATATTAAACCATCAAACTTACTTGTGAATGATAAAGGGGAGGTAAAGATTGCAGATTTTGGAGTGAGTCATGTGGTGGAAGGTAGGTTTGAAGGGAATGAGTATGATGCAGGGACTTGTGCTTACATGAGTCCAGAAAGGATTGATCCAGAAAGATGGGGTGGTGAAAATGCAGATGAGTTTGCAGGAGATGTGTGGTCAATGGGAGTGGTAATGTTGGAATGTCTTTTGGGTTATTTTCCATTGATTGGTGCAGGGCAGAGAGCAGATTGGGCAACTTTGATGTGTGCAATTTGCTTTGGTGAGAAGCTGGAGATGCCAGAAAAAGCATCTCCAGAGTTTCAAAATTTTGTGAGGAGATGTCTTGAGAAGAATTGGAGGAAGAGAGCAACAGTATTAGAACTTCTGCACCACCCTTTTGTCACTCCCAAAATCCGTTGCTCTTAG	1026	0.4396	MTLVIRERRHKQALRLSLPKSPSISIPSHSDFPHQIHVPAVLTSPSSHVDSSPGIIKDLSDLEKLSVLGHGNGGTVYKVYHNSSRSFYALKVLRLNENDLGIRQPATLEAEILKRVDSPYIVRCHAVFDNGNSNNNDGDKGGDISFVMEYMEGGSLHDVLREHHRLPEEVISVLARRVLEGLGYLHGMNIVHRDIKPSNLLVNDKGEVKIADFGVSHVVEGRFEGNEYDAGTCAYMSPERIDPERWGGENADEFAGDVWSMGVVMLECLLGYFPLIGAGQRADWATLMCAICFGEKLEMPEKASPEFQNFVRRCLEKNWRKRATVLELLHHPFVTPKIRCS*	342

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac2g02197	341	FunFam	Mitogen-activated protein kinase kinase 1	42	152	-	-
	Phac2g02197	341	ProSiteProfiles	Protein kinase domain profile.	62	334	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac2g02197	341	SUPERFAMILY	Protein kinase-like (PK-like)	37	336	IPR011009	-
	Phac2g02197	341	CDD	PKc_MAPKK_plant_like	60	335	-	-
	Phac2g02197	341	Gene3D	Transferase(Phosphotransferase) domain 1	149	340	-	-
	Phac2g02197	341	Pfam	Protein kinase domain	63	334	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac2g02197	341	ProSitePatterns	Protein kinases ATP-binding region signature.	68	91	IPR017441	GO:0005524
	Phac2g02197	341	PANTHER	MITOGEN-ACTIVATED KINASE KINASE KINASE	22	335	-	-
	Phac2g02197	341	PRINTS	Tyrosine kinase catalytic domain signature	184	202	IPR001245	GO:0004672\|GO:0006468
	Phac2g02197	341	PRINTS	Tyrosine kinase catalytic domain signature	256	278	IPR001245	GO:0004672\|GO:0006468
	Phac2g02197	341	PRINTS	Tyrosine kinase catalytic domain signature	148	161	IPR001245	GO:0004672\|GO:0006468
	Phac2g02197	341	ProSiteProfiles	CRIB domain profile.	24	39	IPR000095	-
	Phac2g02197	341	SMART	serkin_6	62	334	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac2g02197	341	Gene3D	Phosphorylase Kinase; domain 1	46	148	-	-
	Phac2g02197	341	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	190	202	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac2g02197	Phac-Chr2	23640460	23641485	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac2g02197	1	334	MAP Kinase Kinase Gene Family	AT1G32320	52.096	2.74e-108	317

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE7	Phac2g02197		Pkinase	4.8e-61	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac2g02197	K20604		-	gmx:100817973	551.592