Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g02175 ATGGTGGAAAGAAGAGTGACTTTATCTAAGGAAGTTAGGAATGGGTTAGAATTTTTGAAGCGTAAAAGGCTTCAGCGTGCACAATCTGTCACTGCCACCCAGACAAATATTGCTAACATGATGAACAGAAGTGGAGGAGATGCTTTAAGAGCTTCAACATCATGTGGCATGAGATTGCATGGTAATGCTGATGTCTTTTCCAAACGCAAGGTGGATAAGTTTGATACAAATGACCTGGACTGGACTGATTCAATTCCAGAGTGTCCTGTGTATTCGCCAACAAAAGAGGAATTTGAGGATCCTTTGATTTATTTGCAAAAGATAGCTCCAGAAGCTTCTAAATATGGTATATGCAAGATTATTTCTCCTTTGAGCGCTTCAGTACCTGCTGGGGTTGTCTTAATGAAGGAGAAAGCAGGATTCAAGTTTACAACTAGAGTGCAGCCTCTTCGCCTTGCTGAATGGGATTCTGAAGACAAAGTCACGTTTTTTATGAGTGGAAGAAATTACACGTTTCGTGATTTTGAGAAAATGGCAAACAAGGTATTTGCTAGAAGATATTGCAGTGCTGGGTGCCTTCCTGCCACATACTTGGAAAAAGAGTTTTGGAATGAAATTGGTTGTGGGAAGATGGAAACTGTTGAATATGCATGTGATGTTGATGGCAGTGCCTTTTCGTCTTCTCCCGTTGACCAGCTTGGGAACAGCAAATGGAATTTGAAGAAACTTTCAAGGTTGCCCAAATCAAGTTTACGGCTCTTGGAAACATTAATTCCGGGAGTAACGGAACCCATGCTGTACATTGGAATGCTGTTTAGTATGTTTGCTTGGCATGTGGAAGATCATTATTTGTACAGCATTAATTATCATCACTGTGGGGCATCCAAAACATGGTACGGTATTCCAGGTCATGCAGCTTTGGAATTTGAAAGGGTGGTGAGAGAACATGTGTACACTAATGATATTTTATCAAGTGATGGGGAAGATGGTGCCTTTGATGTTCTCCTGGGGAAAACAACTCTATTTCCACCAAATATTTTGTTGGAGCATGAAGTCCCTGTCTACAAGGCTGTTCAAAAGCCTGGGGAGTTTATAATAACCTTCCCTAGGGCCTATCATGCTGGCTTCAGTCATGGTTTCAACTGTGGAGAAGCAGTGAATTTTGCAATTGGTGATTGGTTTCCGTTAGGGGCTATTGCTAGCAGAAGATATGCACTTCTTAACAGGGTTCCTTTACTGCCTCATGAAGAACTTCTATGCAAAGAAGCAATGCTTCTCCGTACATGCTTGGAACTTGAAGATTCTGATTTTCCCTCTTCAGATTTCTTTTCTCACAATAGCATTAAGATTTCATTTGTTAACTTGATGCGATTCCATCATTGTGCGCGATGGTTTCTAACGAAATCAAGGGCTTGTATAAGCTTCTCTTCTCATTCCCATGGCACAATTCTCTGTAGCCTTTGCAAACGTGACTGTTACATAGCTTATGTTGACTGCAACTGTCATACGCATCCTGTATGCCTACGTCACGATGTTGATTCTCTTGACTTCACCTGTGGGAGCAAACACACACTTTATATGCGGGAGGATATTATGGATATGGAAGCTGCAGCCAAGATGTTTGAGCTGGAAGATGGGATATCATATGAGATAAGGAAGCAAACCAAAAGTGGCCAAAACATGTATGCGTATCCTTTATCAAATATGTTTCAGAGAGCCGAGGCAAATGGATACGTTCCTTATTGTGAGCTAAAACTTGATTCTGTTGTTGAATTTTATACAACTCCAGAGCACTCAACAAATCAAGAATACAGTACACAGAATCAATCTCTCTTTGTACCTTGCTCTGAAAATCAAATACCCTTGGTGTCTGACGTTTCATTTTCATCAGCCACGTCCACTCTTTCTGAATCTCTTGAGAGCTTCTCTAATCCCAAAAATGCTGAAGGGCATACTAATATCAATTTAGGAGGTATCGCTGATTTTGAGGAGTTTGGTGAAAGAATATCCAACAGTGCATGTGAATCTTCATTATCCCCTGCTGTGTGCCATGAAAGCTCGGGTAAACCACAGGGTGTTCTTCAGAGATTTGATACAAAGCCCATCGCGGACGAGAGTGATTCTGATTCAGAGATATTTAGGGTAAAGCGCCCTTCTTCTCTGAAAGCGGAGAGGAGACATATGAATGATGTCATGTCTTCGAAGCAGACCGAGCAGCAGATTTTGCTATATGAATGGACCATGATGACATTGTAA 2256 0.4127 MVERRVTLSKEVRNGLEFLKRKRLQRAQSVTATQTNIANMMNRSGGDALRASTSCGMRLHGNADVFSKRKVDKFDTNDLDWTDSIPECPVYSPTKEEFEDPLIYLQKIAPEASKYGICKIISPLSASVPAGVVLMKEKAGFKFTTRVQPLRLAEWDSEDKVTFFMSGRNYTFRDFEKMANKVFARRYCSAGCLPATYLEKEFWNEIGCGKMETVEYACDVDGSAFSSSPVDQLGNSKWNLKKLSRLPKSSLRLLETLIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYHHCGASKTWYGIPGHAALEFERVVREHVYTNDILSSDGEDGAFDVLLGKTTLFPPNILLEHEVPVYKAVQKPGEFIITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAIASRRYALLNRVPLLPHEELLCKEAMLLRTCLELEDSDFPSSDFFSHNSIKISFVNLMRFHHCARWFLTKSRACISFSSHSHGTILCSLCKRDCYIAYVDCNCHTHPVCLRHDVDSLDFTCGSKHTLYMREDIMDMEAAAKMFELEDGISYEIRKQTKSGQNMYAYPLSNMFQRAEANGYVPYCELKLDSVVEFYTTPEHSTNQEYSTQNQSLFVPCSENQIPLVSDVSFSSATSTLSESLESFSNPKNAEGHTNINLGGIADFEEFGERISNSACESSLSPAVCHESSGKPQGVLQRFDTKPIADESDSDSEIFRVKRPSSLKAERRHMNDVMSSKQTEQQILLYEWTMMTL* 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g02175 751 ProSiteProfiles JmjN domain profile. 88 129 IPR003349 -
Phac2g02175 751 SUPERFAMILY Clavaminate synthase-like 166 421 - -
Phac2g02175 751 FunFam Lysine-specific demethylase isoform A 83 432 - -
Phac2g02175 751 SMART JmjN_1 87 128 IPR003349 -
Phac2g02175 751 SMART cupin_9 232 405 IPR003347 -
Phac2g02175 751 Pfam JmjC domain, hydroxylase 265 388 IPR003347 -
Phac2g02175 751 Gene3D Cupin 88 438 - -
Phac2g02175 751 Pfam C5HC2 zinc finger 485 536 IPR004198 -
Phac2g02175 751 PANTHER LYSINE-SPECIFIC DEMETHYLASE 81 610 - -
Phac2g02175 751 ProSiteProfiles JmjC domain profile. 235 405 IPR003347 -
Phac2g02175 751 Pfam jmjN domain 89 121 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g02175 Phac-Chr2 23489456 23496115 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g02175 85 423 JUMONJI Transcription Factor Family AT1G30810 35.910 3.30e-62 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Phac2g02175 JmjC 1.5e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g02175 - - gmx:100798611 1316.98