Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Phac2g02118 | ATGGGTCGGAGAAACGACGCCGTTTTGGTCAGCGAACCAGTCGCCGAAGAAGTCCCCTACAGCCCCGAACTCGATTCCGAGAAGAAGAAGAAGAAAAAGAAGAATAAGAACAAAGACAAGCAGCATGAAAGCGAAAACAGCCCCAAACGAAAGCTCGACGAACTCGACCATCAAAACGGCACCGAATCGAAGAAGAAGAAAAAGAAGAAGCACCACGACTCCAAAGAGAATGCCGAGGAAACCAACGGTGACGGGAACAACGACAACGGCGCTAATCGCGATGAAACGGTTGCGGACGGGTCTGTGGTTGTTACAGGCAAGAATGCCGGAGATGCGAAGTACGCGGCGTTGAAAAACTTTTCGGATTCTGGACTTCCAGAGAATGTGCTGCAGTGCTGCAAGGGTTTCGAGAAGCCTTCTCCGATTCAATCGCGGGCGTGGCCTTTCTTATTGGACCGTCGTGATTTGATTGGAATCGCTGCCACTGGATCAGGGAAAACGTTGGCGTTTGGGATACCGGCGATTATGCATGTTTTGGGAAAGCGGAAGGGTAAAGGTTCCAGGGGGCGGAACCCTCTTTGCCTCGTTCTCTCTCCTACTAGAGAGCTAGCACAACAAATATCAGATGTCATGTGTGATGCTGGTAGTTCTTGTGGTGTGGAATCAATCTGTTTGTATGGTGGAACCTCCAAAGGCCCACAAATCTCCTCACTAAAATCTGGCATTGACATTGTCATTGGAACCCCGGGTCGTATCCAGGATCTAATTGAAATGGGTGTCTGTTGCCTCAAAGAAGTATCTTTTGTGGTACTTGATGAAGCAGATCGGATGCTTGACATGGGTTTTGAGCAAATAGTTCGCTCTATTCTGGGTCAGACATGTTCTGATCGTCAAATGGTTATGTTCAGTGCTACATGGCCTTTGGCAGTTCATCATTTGGCTCAGGAGTTTATGGATCCCAATCCTGTAAAAGTTGTTGTAGGTTCAGAAGACTTGGCTGCCAATCATGATGTCATGCAGATAGTTGAGGTCTTGGATGACCGGGCTCGCGATAGGCGCCTGGTTGCTTTACTGGAAAAGTACCACAAATCTCAGAGCAATCGAGTATTGGTCTTTGTTTTGTACAAAAATGAAGCCAAACGAGTTGAAAATATGCTTCAAGAAGGGGGTTGGAAGGCTGTTTCAATACATGGGGACAAAGCTCAACATGATCGCACAAAGGCACTCTCATTATTCAAGAAGGGAACCTGTCCTTTGATGGTTGCTACCGATGTGGCTGCACGGGGATTGGATATTCCAGATGTTGAAGTAGTGATAAACTATAGTTTTCCTCTCACCACAGAAGATTATGTTCATAGAATTGGGCGAACTGGACGAGCTGGTAAGAAAGGTGTTGCCCATACATTCTTCACACAGCAGAATAAGGGACTTGCTGGGGAGCTGGTGAATGTTTTGAGGGAAGCAGGGCAAATTGTACCCGATGCCCTCCTGAAATTTGGCACACATGTAAAGAAAAAGGAGTCCAAGCTTTACGGGGCGCACTTCAAGGAAATCCCTGTTGATGCTCCAAAGTCTCAAAAGAAAACATTTGACAACTCTGACGATGAAGACTAA | 1614 | 0.469 | MGRRNDAVLVSEPVAEEVPYSPELDSEKKKKKKKNKNKDKQHESENSPKRKLDELDHQNGTESKKKKKKKHHDSKENAEETNGDGNNDNGANRDETVADGSVVVTGKNAGDAKYAALKNFSDSGLPENVLQCCKGFEKPSPIQSRAWPFLLDRRDLIGIAATGSGKTLAFGIPAIMHVLGKRKGKGSRGRNPLCLVLSPTRELAQQISDVMCDAGSSCGVESICLYGGTSKGPQISSLKSGIDIVIGTPGRIQDLIEMGVCCLKEVSFVVLDEADRMLDMGFEQIVRSILGQTCSDRQMVMFSATWPLAVHHLAQEFMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRARDRRLVALLEKYHKSQSNRVLVFVLYKNEAKRVENMLQEGGWKAVSIHGDKAQHDRTKALSLFKKGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTQQNKGLAGELVNVLREAGQIVPDALLKFGTHVKKKESKLYGAHFKEIPVDAPKSQKKTFDNSDDED* | 538 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Phac2g02118 | 537 | MobiDBLite | consensus disorder prediction | 38 | 62 | - | - | |
Phac2g02118 | 537 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 270 | 278 | IPR000629 | - | |
Phac2g02118 | 537 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 353 | 500 | IPR001650 | - | |
Phac2g02118 | 537 | Gene3D | - | 328 | 503 | IPR027417 | - | |
Phac2g02118 | 537 | CDD | DEADc | 134 | 325 | - | - | |
Phac2g02118 | 537 | FunFam | ATP-dependent RNA helicase RhlB | 327 | 504 | - | - | |
Phac2g02118 | 537 | Pfam | DEAD/DEAH box helicase | 141 | 309 | IPR011545 | GO:0003676|GO:0005524 | |
Phac2g02118 | 537 | SMART | helicmild6 | 380 | 461 | IPR001650 | - | |
Phac2g02118 | 537 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 191 | 474 | IPR027417 | - | |
Phac2g02118 | 537 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 147 | 324 | IPR014001 | - | |
Phac2g02118 | 537 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 118 | 144 | IPR014014 | GO:0003724 | |
Phac2g02118 | 537 | MobiDBLite | consensus disorder prediction | 1 | 95 | - | - | |
Phac2g02118 | 537 | CDD | SF2_C_DEAD | 338 | 470 | - | - | |
Phac2g02118 | 537 | Pfam | Helicase conserved C-terminal domain | 352 | 461 | IPR001650 | - | |
Phac2g02118 | 537 | Gene3D | - | 20 | 327 | IPR027417 | - | |
Phac2g02118 | 537 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 59 | 496 | - | - | |
Phac2g02118 | 537 | SMART | ultradead3 | 135 | 341 | IPR014001 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Phac2g02118 | Phac-Chr2 | 23021796 | 23026276 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Phac2g02118 | 117 | 469 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 32.676 | 4.41e-55 | 189 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Phac2g02118 | K14811 | - | gmx:100806057 | 926.006 |