Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g02118 ATGGGTCGGAGAAACGACGCCGTTTTGGTCAGCGAACCAGTCGCCGAAGAAGTCCCCTACAGCCCCGAACTCGATTCCGAGAAGAAGAAGAAGAAAAAGAAGAATAAGAACAAAGACAAGCAGCATGAAAGCGAAAACAGCCCCAAACGAAAGCTCGACGAACTCGACCATCAAAACGGCACCGAATCGAAGAAGAAGAAAAAGAAGAAGCACCACGACTCCAAAGAGAATGCCGAGGAAACCAACGGTGACGGGAACAACGACAACGGCGCTAATCGCGATGAAACGGTTGCGGACGGGTCTGTGGTTGTTACAGGCAAGAATGCCGGAGATGCGAAGTACGCGGCGTTGAAAAACTTTTCGGATTCTGGACTTCCAGAGAATGTGCTGCAGTGCTGCAAGGGTTTCGAGAAGCCTTCTCCGATTCAATCGCGGGCGTGGCCTTTCTTATTGGACCGTCGTGATTTGATTGGAATCGCTGCCACTGGATCAGGGAAAACGTTGGCGTTTGGGATACCGGCGATTATGCATGTTTTGGGAAAGCGGAAGGGTAAAGGTTCCAGGGGGCGGAACCCTCTTTGCCTCGTTCTCTCTCCTACTAGAGAGCTAGCACAACAAATATCAGATGTCATGTGTGATGCTGGTAGTTCTTGTGGTGTGGAATCAATCTGTTTGTATGGTGGAACCTCCAAAGGCCCACAAATCTCCTCACTAAAATCTGGCATTGACATTGTCATTGGAACCCCGGGTCGTATCCAGGATCTAATTGAAATGGGTGTCTGTTGCCTCAAAGAAGTATCTTTTGTGGTACTTGATGAAGCAGATCGGATGCTTGACATGGGTTTTGAGCAAATAGTTCGCTCTATTCTGGGTCAGACATGTTCTGATCGTCAAATGGTTATGTTCAGTGCTACATGGCCTTTGGCAGTTCATCATTTGGCTCAGGAGTTTATGGATCCCAATCCTGTAAAAGTTGTTGTAGGTTCAGAAGACTTGGCTGCCAATCATGATGTCATGCAGATAGTTGAGGTCTTGGATGACCGGGCTCGCGATAGGCGCCTGGTTGCTTTACTGGAAAAGTACCACAAATCTCAGAGCAATCGAGTATTGGTCTTTGTTTTGTACAAAAATGAAGCCAAACGAGTTGAAAATATGCTTCAAGAAGGGGGTTGGAAGGCTGTTTCAATACATGGGGACAAAGCTCAACATGATCGCACAAAGGCACTCTCATTATTCAAGAAGGGAACCTGTCCTTTGATGGTTGCTACCGATGTGGCTGCACGGGGATTGGATATTCCAGATGTTGAAGTAGTGATAAACTATAGTTTTCCTCTCACCACAGAAGATTATGTTCATAGAATTGGGCGAACTGGACGAGCTGGTAAGAAAGGTGTTGCCCATACATTCTTCACACAGCAGAATAAGGGACTTGCTGGGGAGCTGGTGAATGTTTTGAGGGAAGCAGGGCAAATTGTACCCGATGCCCTCCTGAAATTTGGCACACATGTAAAGAAAAAGGAGTCCAAGCTTTACGGGGCGCACTTCAAGGAAATCCCTGTTGATGCTCCAAAGTCTCAAAAGAAAACATTTGACAACTCTGACGATGAAGACTAA 1614 0.469 MGRRNDAVLVSEPVAEEVPYSPELDSEKKKKKKKNKNKDKQHESENSPKRKLDELDHQNGTESKKKKKKKHHDSKENAEETNGDGNNDNGANRDETVADGSVVVTGKNAGDAKYAALKNFSDSGLPENVLQCCKGFEKPSPIQSRAWPFLLDRRDLIGIAATGSGKTLAFGIPAIMHVLGKRKGKGSRGRNPLCLVLSPTRELAQQISDVMCDAGSSCGVESICLYGGTSKGPQISSLKSGIDIVIGTPGRIQDLIEMGVCCLKEVSFVVLDEADRMLDMGFEQIVRSILGQTCSDRQMVMFSATWPLAVHHLAQEFMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRARDRRLVALLEKYHKSQSNRVLVFVLYKNEAKRVENMLQEGGWKAVSIHGDKAQHDRTKALSLFKKGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTQQNKGLAGELVNVLREAGQIVPDALLKFGTHVKKKESKLYGAHFKEIPVDAPKSQKKTFDNSDDED* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g02118 537 MobiDBLite consensus disorder prediction 38 62 - -
Phac2g02118 537 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 270 278 IPR000629 -
Phac2g02118 537 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 353 500 IPR001650 -
Phac2g02118 537 Gene3D - 328 503 IPR027417 -
Phac2g02118 537 CDD DEADc 134 325 - -
Phac2g02118 537 FunFam ATP-dependent RNA helicase RhlB 327 504 - -
Phac2g02118 537 Pfam DEAD/DEAH box helicase 141 309 IPR011545 GO:0003676|GO:0005524
Phac2g02118 537 SMART helicmild6 380 461 IPR001650 -
Phac2g02118 537 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 474 IPR027417 -
Phac2g02118 537 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 147 324 IPR014001 -
Phac2g02118 537 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 118 144 IPR014014 GO:0003724
Phac2g02118 537 MobiDBLite consensus disorder prediction 1 95 - -
Phac2g02118 537 CDD SF2_C_DEAD 338 470 - -
Phac2g02118 537 Pfam Helicase conserved C-terminal domain 352 461 IPR001650 -
Phac2g02118 537 Gene3D - 20 327 IPR027417 -
Phac2g02118 537 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 59 496 - -
Phac2g02118 537 SMART ultradead3 135 341 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g02118 Phac-Chr2 23021796 23026276 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g02118 117 469 Eukaryotic Initiation Factors Gene Family AT3G19760 32.676 4.41e-55 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g02118 K14811 - gmx:100806057 926.006