Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g01980 ATGGGGTCCAGTGGCAGCAAAGCCACGTCATCGTCGTCGTCTTCGGGGAGTTTCAGGAAGGGTCGATCTAAGGGGCACAGAGGTTTCCCGTCTTATTGTCTGGGAACGTCGTCTGGATCTCGTGACATTGATAGTGACGACCAGGTTTGTGATCAGAATAAAGTGAATGGAGATGATGTGACATACACCAGTGGCAATGAAATAGACTCAGATGAAGGGAAGACAGAGTCCTTTAGGAAGGTGAAACCGGATAAATCTGATGAAGTGCCTTCTAACATTGACCTTGAGGAGTGGCGTCACAGTGCATCCAGAACTGGTAGCAGCTCTGCACATTCTTCTTCAAATCAGTCCTTGAACCCCTCAAGTCGGTTCCTATCTCGCTTTAGCCTTGTTCCTGGTAATATAAGCTTCAGACTTAGCAGAACCACAAGTTTGGGATCATCTAGGCCTTGCCCGGTTTCTTCAACTAGTCTCTCAATATATGATGAAGGTGAGCTTAGTTTGCATCCAGGGCCTCCTGGCAGCTTGATTAATAGAAATGAAAATCAACACCGTAGTGGTTTGCTCAATGCATCTTTTGTTAGTCAAGTGCCTAGGCAGTGTCATGAAGAAACCTCTAATAGTTTACGACCTAATGCGCCACCATTGGTTTCACCTGGTAATTTGGTTGGCAGTCGCCCACTTTCTTCTGTCCAGGATGTGGCTAGAGATGGAAATGTTGCAAGAGAAGTGCCTGATGTCAACATGTTTTCTCCAAGAATTCATACTGACACAGAAAATGTTGAGACTAGACATGCTGATAGAAGAAATGGAGCTCGAGAACCTGTCGAGCGTAATGTTCGTTTTAGCCGAACTTTAAGTGTTGGAAGGCTCCGTGACAGAGTTCTCCGGCGATCAACATTGTCAGACTTCACTTTTTGCCCTATGCAAAGAGAGAGAGAAGCAAGAGATGCTGGTCAAGAGAATGAAAGACGAGTGGGGGATAGAGACACAAGAGTGTCATCAACTGGTCGTAATGCTTCAAATTCTTCTACACCTAGATATCCTCTGCCCAGTACACCAAGCTCCTTGTTTGGCATCCAAGACTATGAAGTTGAGCCGTCACGTTCTAGAGAAACTAGGTATCAGGATCTGCTGGAACATAGGTCCAATTTCCTGGAACGGAGAAGAAGAATACGGTCCCAGGTCCGTGCTCTTCAGCGGTTGGGTAGCCGGTTTGAAAATCTTTCTGGACATGACAGATCATGTATCTTATCTGGTCAACACAGAAACGGTCGTTGTGCATGCAGAACCAATAGTCGTGATACCAATTCAAATGATGATACCAATGCTAGAGCTAGCATATCAAGAATTGTTATGCTAGCTGAAGCCTTATTTGAAGTTCTGGATGAAATTCACCAGCAATCTGTGGTTTTATCTTCTCGCCCTTCTGTGTCATCTATTGGTTCCGTTCCTGCACCTAATGAAGTTGTGGAATCCTTGCCTGTCAAATTATACAAAAAGTTGCACAAACATCAAGAAGAACCTGTACAATGTTATATATGCCTTGTGGAGTATGAGGATGGAGACAGCATGAGAGTTCTGCCTTGTCATCATGAATTTCATACAACATGTATAGACAAGTGGCTGAAAGAGATTCACAGGGTGTGCCCGCTATGTCGAGGGGATATCTGTGTATCTGATTCACTGCCAAGGGAGAACTAA 1704 0.4478 MGSSGSKATSSSSSSGSFRKGRSKGHRGFPSYCLGTSSGSRDIDSDDQVCDQNKVNGDDVTYTSGNEIDSDEGKTESFRKVKPDKSDEVPSNIDLEEWRHSASRTGSSSAHSSSNQSLNPSSRFLSRFSLVPGNISFRLSRTTSLGSSRPCPVSSTSLSIYDEGELSLHPGPPGSLINRNENQHRSGLLNASFVSQVPRQCHEETSNSLRPNAPPLVSPGNLVGSRPLSSVQDVARDGNVAREVPDVNMFSPRIHTDTENVETRHADRRNGAREPVERNVRFSRTLSVGRLRDRVLRRSTLSDFTFCPMQREREARDAGQENERRVGDRDTRVSSTGRNASNSSTPRYPLPSTPSSLFGIQDYEVEPSRSRETRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCACRTNSRDTNSNDDTNARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPNEVVESLPVKLYKKLHKHQEEPVQCYICLVEYEDGDSMRVLPCHHEFHTTCIDKWLKEIHRVCPLCRGDICVSDSLPREN* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g01980 567 MobiDBLite consensus disorder prediction 54 68 - -
Phac2g01980 567 MobiDBLite consensus disorder prediction 1 19 - -
Phac2g01980 567 MobiDBLite consensus disorder prediction 102 121 - -
Phac2g01980 567 FunFam Putative RING zinc finger domain superfamily protein 481 559 - -
Phac2g01980 567 MobiDBLite consensus disorder prediction 69 101 - -
Phac2g01980 567 MobiDBLite consensus disorder prediction 197 214 - -
Phac2g01980 567 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 475 559 IPR013083 -
Phac2g01980 567 MobiDBLite consensus disorder prediction 333 359 - -
Phac2g01980 567 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 566 - -
Phac2g01980 567 Pfam Ring finger domain 511 554 IPR001841 -
Phac2g01980 567 MobiDBLite consensus disorder prediction 197 227 - -
Phac2g01980 567 ProSiteProfiles Zinc finger RING-type profile. 512 554 IPR001841 -
Phac2g01980 567 MobiDBLite consensus disorder prediction 312 332 - -
Phac2g01980 567 MobiDBLite consensus disorder prediction 312 359 - -
Phac2g01980 567 MobiDBLite consensus disorder prediction 1 121 - -
Phac2g01980 567 SMART ring_2 512 553 IPR001841 -
Phac2g01980 567 SUPERFAMILY RING/U-box 490 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g01980 Phac-Chr2 21829884 21835382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g01980 231 561 C3H Transcription Factor Family AT5G45290 61.947 1.93e-119 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g01980 - - gmx:100815830 917.916