Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g01848 ATGGCAGCAGAAGAAGCCACATGTCAGTTCCTTTCAAGCGCTACAATGGCGACCGCAAAACTTGCATTTGCCAATCACTTTATATATACTCTTCTCAACGGTTCCCCCTTCTCTCTCATATCCATTTATATCTATATTGGTCTTCGTTTTTCTGCTCTTAATCTTCTCACTTTGCCACCACCATTTCTTCCTTTCTCTGCACGCTACCACATATTTCTCGTGTTTCTCACGGTTGCCTTCGCTACAGTTTTTCTTTTTTGCTTGGATCAAGTGCCAACCACGTTTCCTATAGCTGTATCTGGCTGTGTCTTCTTCTGGGATACAATGAGTGGTGGTGTTAGTGGTGCATGCCCCTGCCCCAGGCGTAGTAGTGAGGGTTCCATGGAGGACCTTAATGGGGATACGGTGGGGAATTTGAATCAGAATTCAGGAAAGCCTCCGAGGGATTATTCGTCTATGCGACATTTCAGCAGCTCTTCTTGGTCTGCTGAACCGTTTTCAAACGTGCATCTGGATCCGATTGAATCTGCAGCTAATTGCAAAAGGGTCGATATAGTTTCTGGACCAAAGCAGTACATGGAGGATGAATTCATATGCATTGATATTCTTAGTGAATGTGACGGTCTTGGAGCAAACATTGCTTCTCCTGCAGCATTTTATGGGGTATTTGATGGACATGGTGGTGTTGACGCAGCATCATTTACGAGAAAGAACATCCTCAAGTTTATAGTTGAAGATGCCCATTTCCCATCTGGCATTAAGAAAGCAATTAAGAGCGCATTTGTGAAGGCTGATCTTGCTTTTAGAGATGCCAGTGCTCTTGATAGCTCTTCAGGCACCACCGCTCTGATAGCCCTTATGTTGGGAAGTTCCATGCTGATTGCCAATGCAGGAGATTCTCGTGCTGTATTGGGCAAACGGGGCAGAGCCGTTGAACTTTCCAAAGACCATAAACCAAATTGCACTTCTGAAAGATTAAGAATTGAAAAACTGGGTGGGGTTATCTATGATGGATACCTCAATGGCCAACTATCAGTTGCTCGTGCTCTTGGAGATTGGCACATAAAAGGCACTAAAGGTTCTAAGAGTCCTTTAAGCTGCGAGCCGGAGCTGGAGGAGATTGTGCTGACCGAAGAGGATGAGTTTTTGATAATGGGCTGTGATGGATTGTGGGATGTGATGAGCAGCCAGTGTGCCGTGACAATGGTGAGGAAGGAGCTCATGCAGCATAATGATCCCAACAAATGTGCAAAAGTACTTGTTTTGGAGGCCCTCCAACGCAACACATGTGACAACCTCACAGTAGTGATTGTGTGTTTCTCCAAAGATCCACCTTCTAAAATTGAAATTCCTAGATCATATAGGAGGAGGAGTATTTCTGCTGAGGGCCTTGATCTTCTCAAGGGTGTCTTGAATGATTCTGAGCCTTCATTACTTGTACTATATGATTATTACAAGGACTATCACCCGGCAAGGTTCACAGATACTTCTGGTCTTGTTGTCTACAACAAGCTTCTTGAAGTCCAATTTTTGACCTCGATTGATGAGATGCATAAACTTTGGAAAGCATTGGCATACCGTAGATCCTCCTCGACCCCTTATCTAAGGCGTTTCCAATTCCAAACGCATTCATCTACATCTTCATCTTCATCTTCGTATTCTTCTTCTGCACCAAGCGAGGAGCATGTTTCGCAGCTGATACTGGACCAGAAATCTGCTACCCAAGCGTTGGAATGCTTCAGATGGGCGTCCACTGTTCCCAACTTCGCCCATTCTCAGTCCACATACCGCGCTTTGATTCACAAGCTCTGCACCTTCCGCCGTTTCGACACTGTCAAGCAACTGCTCGACGAAATGCCCCAATCACTCGGTGCACCACCCAATGATGCCATCTTCGTCACCATTATCCGCGGCCTCGGCCGAGCGCGGATGATTAGAACTGTAATCAAAGTACTTGACTTGGCGTACAAGTTCCATGGCAGTCCCTCCCTCAAGATTTTCAACTCAATTTTGGATGTCCTTGTGAAGGAGGACATTGACATGGCCCGGGAATTTTATAGAAAGAGCATGATGGCGAGTGGGGTTGAGGGGGACGATTACACGTTTGGGATTTTGATGAAAGGGATGTGCCTCACTAATAGGATAGGTGAAGGTTTTAAGCTCTTGCAGCTTATTAAGTCCAGAGGGGTTACTCCAAACACTGTGGTTTACAACACTTTGCTTCATGCGCTTTGTAGGAATGGGAAGGTAGGGAGGGCTAGGAGCTTGATGAGTGAGATGGAGGAGCCTAATGATGTTACCTTTAATATTTTGATATCTGGGTACTGTAAGGAAGGGAATTCAGTTCAGCCTCTTGTCCTGCTGGAGAAGAGTTTTAGCCTGGGATTTGTGCCTGATACTGTCTCTGTTACTAAGGTGCTGGAAATTCTATGCAATTCTGGCCGCGCCACAGAGGCCGCTGAGGTTTTAGAGAGAGTTGAGAGCATGGGAGGTTCGCTAGATGTTGTGGCTTACAACACCTTGATAAAGGGGTTTTGTGGAGTGGGGAAGGTGAAGGTTGGGCTTCATTTTTTGAAGCAGATGGAGAGTAAAGGCTGTCTTCCAAATGTGGATACCTTTAATGCACTGATATCTGGCTTTTGTGAATCTGGGATGTTGGATTTGGCTCTTGATCTTTTTAATGATATGAAAATAGATGGGATCCAATGGAACTTTGTTACATTCGACTCATTAATTAGGGGTCTGTGTTCAGAAGGAAGAATTGAAGATGGTTTTTCTATTTTGGAGCTAATGGAGGAAAGCAAAGAAGGCTCTAGAGGGCACATCAGTCCTTATAATAGCATAATATATGGCCTGTTTAAGCAAAACCGATTTGATGAGGCAGCTGAGTTTCTTACAAAGATGGGGAACTTGTTCCCTAGAGCTGTTGACAGAAGCCTGAAGATTTTAGAGCACTGCAAGAAGGGATCTATTGAGGATGCAAAGAGGGTATATGATCAGATGACTGATGAAGGTGGAATTCCAAGTATTTTAGTTTATGACTGCCTTGTTCATGGATTTTCCCATCAAGGTAGTGTCCGAGAGGCAGTTGAGCTGATGAATGAAATGATTGCTAATAACTGTTTTCCCATTCCATCTACACTCAATGCTGTCATCACGGGGTTTTGCAGACAAGGAAGAGTTGAGAATGCCTTGAAGTTGGTGGAAGACATGATCGCAAGAGGTTGTGCACCCAATACAGAAACATACTGTCCTCTGATAGATGTCTTATGTAGGAAAGGGGACCTTCAAAAAGCCATGCAAGTCTTCAGAGAAATGGTAGACAAGGGCATCCTTCCCAACCTTTTTATTTGGAATTCACTGCTACTCTCTCTGAGTCAAGAAAGACGCGTCAGTAAGAATACACTCGATGTATATGACATACTCTAG 3429 0.4453 MAAEEATCQFLSSATMATAKLAFANHFIYTLLNGSPFSLISIYIYIGLRFSALNLLTLPPPFLPFSARYHIFLVFLTVAFATVFLFCLDQVPTTFPIAVSGCVFFWDTMSGGVSGACPCPRRSSEGSMEDLNGDTVGNLNQNSGKPPRDYSSMRHFSSSSWSAEPFSNVHLDPIESAANCKRVDIVSGPKQYMEDEFICIDILSECDGLGANIASPAAFYGVFDGHGGVDAASFTRKNILKFIVEDAHFPSGIKKAIKSAFVKADLAFRDASALDSSSGTTALIALMLGSSMLIANAGDSRAVLGKRGRAVELSKDHKPNCTSERLRIEKLGGVIYDGYLNGQLSVARALGDWHIKGTKGSKSPLSCEPELEEIVLTEEDEFLIMGCDGLWDVMSSQCAVTMVRKELMQHNDPNKCAKVLVLEALQRNTCDNLTVVIVCFSKDPPSKIEIPRSYRRRSISAEGLDLLKGVLNDSEPSLLVLYDYYKDYHPARFTDTSGLVVYNKLLEVQFLTSIDEMHKLWKALAYRRSSSTPYLRRFQFQTHSSTSSSSSSYSSSAPSEEHVSQLILDQKSATQALECFRWASTVPNFAHSQSTYRALIHKLCTFRRFDTVKQLLDEMPQSLGAPPNDAIFVTIIRGLGRARMIRTVIKVLDLAYKFHGSPSLKIFNSILDVLVKEDIDMAREFYRKSMMASGVEGDDYTFGILMKGMCLTNRIGEGFKLLQLIKSRGVTPNTVVYNTLLHALCRNGKVGRARSLMSEMEEPNDVTFNILISGYCKEGNSVQPLVLLEKSFSLGFVPDTVSVTKVLEILCNSGRATEAAEVLERVESMGGSLDVVAYNTLIKGFCGVGKVKVGLHFLKQMESKGCLPNVDTFNALISGFCESGMLDLALDLFNDMKIDGIQWNFVTFDSLIRGLCSEGRIEDGFSILELMEESKEGSRGHISPYNSIIYGLFKQNRFDEAAEFLTKMGNLFPRAVDRSLKILEHCKKGSIEDAKRVYDQMTDEGGIPSILVYDCLVHGFSHQGSVREAVELMNEMIANNCFPIPSTLNAVITGFCRQGRVENALKLVEDMIARGCAPNTETYCPLIDVLCRKGDLQKAMQVFREMVDKGILPNLFIWNSLLLSLSQERRVSKNTLDVYDIL* 1143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g01848 1142 ProSitePatterns PPM-type phosphatase domain signature. 219 227 IPR000222 GO:0043169
Phac2g01848 1142 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 904 934 IPR002885 -
Phac2g01848 1142 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1009 1043 IPR002885 -
Phac2g01848 1142 NCBIfam pentatricopeptide repeat 906 935 IPR002885 -
Phac2g01848 1142 NCBIfam pentatricopeptide repeat 700 734 IPR002885 -
Phac2g01848 1142 NCBIfam pentatricopeptide repeat 1012 1043 IPR002885 -
Phac2g01848 1142 NCBIfam pentatricopeptide repeat 735 762 IPR002885 -
Phac2g01848 1142 NCBIfam pentatricopeptide repeat 872 904 IPR002885 -
Phac2g01848 1142 NCBIfam pentatricopeptide repeat 1047 1080 IPR002885 -
Phac2g01848 1142 NCBIfam pentatricopeptide repeat 945 968 IPR002885 -
Phac2g01848 1142 NCBIfam pentatricopeptide repeat 1082 1114 IPR002885 -
Phac2g01848 1142 NCBIfam pentatricopeptide repeat 836 870 IPR002885 -
Phac2g01848 1142 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 698 732 IPR002885 -
Phac2g01848 1142 Gene3D - 179 445 IPR036457 -
Phac2g01848 1142 SMART PP2C_SIG_2 197 440 IPR001932 -
Phac2g01848 1142 SMART PP2C_4 176 438 IPR001932 -
Phac2g01848 1142 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 592 626 IPR002885 -
Phac2g01848 1142 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 662 1001 - -
Phac2g01848 1142 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 733 767 IPR002885 -
Phac2g01848 1142 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1079 1113 IPR002885 -
Phac2g01848 1142 ProSiteProfiles PPM-type phosphatase domain profile. 175 440 IPR001932 -
Phac2g01848 1142 Gene3D Tetratricopeptide repeat domain 541 679 IPR011990 GO:0005515
Phac2g01848 1142 Pfam PPR repeat family 1047 1092 IPR002885 -
Phac2g01848 1142 Pfam PPR repeat family 732 777 IPR002885 -
Phac2g01848 1142 Pfam PPR repeat family 868 917 IPR002885 -
Phac2g01848 1142 Gene3D Tetratricopeptide repeat domain 680 828 IPR011990 GO:0005515
Phac2g01848 1142 Gene3D Tetratricopeptide repeat domain 975 1141 IPR011990 GO:0005515
Phac2g01848 1142 FunFam Probable protein phosphatase 2C 22 174 443 - -
Phac2g01848 1142 Pfam Protein phosphatase 2C 188 432 IPR001932 -
Phac2g01848 1142 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 834 868 IPR002885 -
Phac2g01848 1142 SUPERFAMILY PP2C-like 187 441 IPR036457 -
Phac2g01848 1142 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1044 1078 IPR002885 -
Phac2g01848 1142 CDD PP2Cc 186 440 IPR001932 -
Phac2g01848 1142 Pfam PPR repeat 830 862 IPR002885 -
Phac2g01848 1142 Pfam PPR repeat 594 621 IPR002885 -
Phac2g01848 1142 Pfam PPR repeat 945 968 IPR002885 -
Phac2g01848 1142 Pfam PPR repeat 700 730 IPR002885 -
Phac2g01848 1142 Pfam PPR repeat 985 1005 IPR002885 -
Phac2g01848 1142 Pfam PPR repeat 1012 1041 IPR002885 -
Phac2g01848 1142 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 869 903 IPR002885 -
Phac2g01848 1142 Gene3D Tetratricopeptide repeat domain 898 971 IPR011990 GO:0005515
Phac2g01848 1142 Gene3D Tetratricopeptide repeat domain 829 897 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g01848 Phac-Chr2 20619686 20625692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g01848 188 473 PP2C-type Phosphatase Gene Family AT3G51470 79.720 5.04e-161 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g01848 - - gmx:100786950 1083.55