Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g01811 ATGGGAGGTGACGCTACTACCGCTGAGACTGCCACATCAGAGTCCAACACCGCCGGAGTCAACATCAACATTCGTTGCTCCAATGGCTCAAAGTTTTCCGTCCAGATTAGTCTGGATTCCCTGGTCAGATCTTTCAAAGACGTTGTGGCTCGCAACTGTGACATCCCCGCTGATCAACAGCGTTTGATTTATAAGGGTCGGATCCTCAAGGATGATCAAACCCTCCAAAGCTACGGTTTGGAGGCTGATCACACTGTCCATTTGGTTCGTGGCTTTGCTCCTTCTAACAACACTGGTGGGACTAATGGTGGTGGTGCCAATACCACAACAGCCAATACCACGAGGAGTGCTGGTGCTAATGAGGGTGGGGGTTTGGGAGGGCCAGGATTTGGGGCTTCACTGTTTCCCGGACTTGGTGGTAACAATGGGATGGGGGGCGGTGGCCTCAATGGCTTATTTGGAGCAGGCTTTCCGGATCTTGAACAAATGCAGCAACCGCTTTTGTCAAACCCCAATTTAGTGAGAGATATAATGAACACACCCGCCATGCAGAATTTAATAAATAATCCGGAGATCGTGCGGAATCTTATAATGAATAATCCACAGATGCAAGAGTTAATGGATAGAAACCCTGAGCTGGCACACATACTTAATGATCCCAGCACTCTTCGTCAGACTCTTGAAGCTACGAGGAACCCTGAGATCATGCGCGAAATGATGAGGAATACAGACAGAGCAATGAGCAACATTGAATCTTCTCCTGAGGGATTTAACATGCTGAGACGCATGTATGAAAATGTTCAAGAACCATTTTTAAATGCCACTACAATGGCTGGTAATGCCGGAAATGATGGTGCAGCAGTTAGGAACCAATCAACTAATCCCTCAACTGCTAATTCTGAAGCAACTTCTCCTGTACCCAATACGAACCCACTTCCTAATCCATGGTCCTCTACTACTGGAACTGGAGGTGGCCAAAATAACACCAGAAGGCCAACTGCTACTGGTGGGGATGCTCGACAGCAGGCACCCACTGGCTTAGGAGGGCTTGGACTGCCTGATCTTGAAGGCATGTTGGGTGGAATGCCGGATGCTGCTATGTTGACTCAGTTAATGCAAAATCCAGCTATTTCACAGATGATGCAAAGTATCCTTTCCAATCCACAGACTATGAATCAGATTCTTGGGGTCAACGCTGAGCAGCGTGGCATGCCTGATATGAATTCTCTAAGGGAGGTGATGCAAAACCCAGAGTTTTTACGACTGTTTTCCTCACCTGAGACACTGCAGCAACTCTTGTCTTTCCAGCAAGCTCTCATGTCTCAGCTTGGTCAGCAACAATCAACACAGGAACCAGGTCAAACAGGTGTAGGCACTGGACCGATGAACAACATGGGACTGGAGATGTTATCGAGCATGTTTGGTGGACTTGGAGCTGGTAGCCTTGCTGTTCCTAACAGATCAAATGAGCCACCAGAGCAATTGTATGCCACCCAACTTTCTCAGCTTCAAGAGATGGGTTTCTTTGACACTCAAGAGAACATAAGGGCTCTTATTGCTACATCAGGGAACGTTCATGCAGCAGTTGAGCGGCTTTTGGGGAACTCTGGACAGTAG 1617 0.4787 MGGDATTAETATSESNTAGVNINIRCSNGSKFSVQISLDSLVRSFKDVVARNCDIPADQQRLIYKGRILKDDQTLQSYGLEADHTVHLVRGFAPSNNTGGTNGGGANTTTANTTRSAGANEGGGLGGPGFGASLFPGLGGNNGMGGGGLNGLFGAGFPDLEQMQQPLLSNPNLVRDIMNTPAMQNLINNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNAGNDGAAVRNQSTNPSTANSEATSPVPNTNPLPNPWSSTTGTGGGQNNTRRPTATGGDARQQAPTGLGGLGLPDLEGMLGGMPDAAMLTQLMQNPAISQMMQSILSNPQTMNQILGVNAEQRGMPDMNSLREVMQNPEFLRLFSSPETLQQLLSFQQALMSQLGQQQSTQEPGQTGVGTGPMNNMGLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSGQ* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g01811 538 FunFam Ubiquitin domain-containing protein DSK2b 479 537 - -
Phac2g01811 538 SMART CBM 146 187 IPR006636 -
Phac2g01811 538 SMART CBM 200 239 IPR006636 -
Phac2g01811 538 SMART CBM 352 394 IPR006636 -
Phac2g01811 538 SMART CBM 397 432 IPR006636 -
Phac2g01811 538 Gene3D - 195 253 - -
Phac2g01811 538 FunFam Ubiquitin domain-containing protein DSK2b 17 103 - -
Phac2g01811 538 Pfam UBA/TS-N domain 496 532 IPR015940 -
Phac2g01811 538 SUPERFAMILY UBA-like 492 534 IPR009060 GO:0005515
Phac2g01811 538 ProSiteProfiles Ubiquitin domain profile. 20 89 IPR000626 GO:0005515
Phac2g01811 538 MobiDBLite consensus disorder prediction 95 119 - -
Phac2g01811 538 PANTHER UBIQUILIN 15 533 IPR015496 -
Phac2g01811 538 MobiDBLite consensus disorder prediction 275 349 - -
Phac2g01811 538 SMART ubq_7 20 91 IPR000626 GO:0005515
Phac2g01811 538 CDD UBA_PLICs 496 534 - -
Phac2g01811 538 CDD Ubl_Dsk2p_like 20 92 - -
Phac2g01811 538 Gene3D - 7 102 - -
Phac2g01811 538 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 490 535 IPR015940 -
Phac2g01811 538 MobiDBLite consensus disorder prediction 275 340 - -
Phac2g01811 538 SMART uba_6 496 534 IPR015940 -
Phac2g01811 538 Pfam Ubiquitin family 22 89 IPR000626 GO:0005515
Phac2g01811 538 SUPERFAMILY Ubiquitin-like 14 102 IPR029071 -
Phac2g01811 538 FunFam Ubiquitin domain-containing protein DSK2b 197 253 - -
Phac2g01811 538 Gene3D - 478 538 - -
Phac2g01811 538 MobiDBLite consensus disorder prediction 95 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g01811 Phac-Chr2 20332109 20339131 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g01811 20 89 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.000 8.88e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g01811 K04523 - gmx:100797539 874.774