Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g01799 ATGGATAATGGAGATGACAAGGAGGAGAGTAGTGAAGGGGAAGCAGTGAATGGGGCTAAAATGGTGCAGAAGATAACGATAATGTTAGTGTGTGGTAATGGGAAGGGTTCAAGAACAGGGTCATCATCTTCTAGTTTTTGTCAGGCAGATGAATGTGGTGTGAAATTAAACATGGCCAAGAGATACAACCGCCGTCACAAGGTTTGTGAGAGACATTCTAAGGCTCCTGTTGTTTTAGTTTCTAGCATTCGTCAGAGGTTCTGCCAACAATGTAGCAAGTTCCATGAACTTGCAGAGTTTGATGAGACCAAAAGAAGTTGCAGGAAAACATTGGCTAGAAGAAAAACTCGCACAGACATGTCCTTAGGAGGTGATTAA 378 0.4259 MDNGDDKEESSEGEAVNGAKMVQKITIMLVCGNGKGSRTGSSSSSFCQADECGVKLNMAKRYNRRHKVCERHSKAPVVLVSSIRQRFCQQCSKFHELAEFDETKRSCRKTLARRKTRTDMSLGGD* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g01799 125 ProSiteProfiles Zinc finger SBP-type profile. 44 121 IPR004333 GO:0003677
Phac2g01799 125 SUPERFAMILY SBT domain 46 117 IPR036893 GO:0003677|GO:0005634
Phac2g01799 125 Gene3D - 37 108 IPR036893 GO:0003677|GO:0005634
Phac2g01799 125 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 27 116 IPR044817 GO:0003677
Phac2g01799 125 Pfam SBP domain 47 118 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g01799 Phac-Chr2 20188950 20189977 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g01799 35 112 SBP-box Gene Family AT3G15270 58.974 1.10e-28 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Phac2g01799 SBP 2.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g01799 - - vum:124835315 192.2