Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g01765 ATGGGTCGCGGCAAAATTGAGATAAAGTTGATTGAGAACCCCACCAACAGGCAAGTCACCTACTCCAAGCGAAGGAATGGTATCTTCAAGAAAGCTCATGAACTCAGTGTTCTCTGCGATGCCAAGGTTTCACTCATCATGTTCTCAAAAAACAACAAGATGCATGAATATATTAGTCCTGGCCTTACCACAAAAAAGATCGTTGATCAGTATCAGAAGACTTTGGGGGATATCGATCTGTGGCGTTCCCACTATGAGAAAATGCTTGAGAACTTGAAGAAGCTGAAAGATATTAACAACAAACTCAGGAGACAGATCAGGCACAGGATTGGTGAGGGTTTGGATTTGGACGAGCTGAGCTTCCAGCAACTGCGCACTCTTGAAGAGGATATGGTTGCTTCCATAGGGAAAATACGCGAGCGAAAGTTCCACGTGATCAAAACTCGGACTGATACCTGTAGGAAAAAGGTTAAAAGCTTGGAGCAGATGAATGGAAATCTTCTGCTTGAACTTGAAAAGTGTGTGATCCATCCACAATTTCTTTTGCACGATGAAGGAGACGAGGAATCAGCAGTTGCACTGGCCAATGGTGCCTCCACCCTCTATGCATTCTGTCAGCACCATACTCATCTGAATCTTCCCTCACATCAACACCAACACCATGGAGAAGAACCCTTTAAAACTGACGATCTGCGCCTTGCTTAA 705 0.444 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYISPGLTTKKIVDQYQKTLGDIDLWRSHYEKMLENLKKLKDINNKLRRQIRHRIGEGLDLDELSFQQLRTLEEDMVASIGKIRERKFHVIKTRTDTCRKKVKSLEQMNGNLLLELEKCVIHPQFLLHDEGDEESAVALANGASTLYAFCQHHTHLNLPSHQHQHHGEEPFKTDDLRLA* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g01765 234 Coils Coil 85 105 - -
Phac2g01765 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Phac2g01765 234 Pfam K-box region 83 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phac2g01765 234 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phac2g01765 234 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phac2g01765 234 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phac2g01765 234 MobiDBLite consensus disorder prediction 216 234 - -
Phac2g01765 234 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Phac2g01765 234 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phac2g01765 234 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 205 - -
Phac2g01765 234 ProSiteProfiles K-box domain profile. 85 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phac2g01765 234 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Phac2g01765 234 MobiDBLite consensus disorder prediction 214 234 - -
Phac2g01765 234 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phac2g01765 234 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Phac2g01765 234 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g01765 Phac-Chr2 19774604 19777700 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g01765 1 216 MADS-box Gene Family AT3G54340 52.055 7.78e-68 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phac2g01765 K-box 8.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g01765 K09264 - gmx:100784496 413.69