Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g01756 ATGGACCACCCGCTTCACCCACTGCCGGAGGCTGCTCCCAACACCGCTCGGGGTTTCGAGGACTCCCGACTGGTGGGACCCCCTCTCGCGCCTGCTGGCTGCGCTGATGTGCCCCAAAAAGATGTTAATAGTAGCGTGCCGAATTTGGAGGTTACGGTCGTCGAAGGCGCCGTTTTGAAGCGGAAGCGTGGTCGTCCGGCCAAGGGAGCTCCGAAAGTGGCGCCTCTGGTCAGACAAAAGAAGGACGAGGAAGATGTTTGCTTCATTTGCTTCGACGGTGGGAGCCTCGTTCTCTGTGATCGGAGGGGTTGTCCTAAAGCGTATCATCCTACGTGTATTAAACGAGACGAAGCGTTTTTTCGATCGAAGGCCAAGTGGAATTGCGGTTGGCATATATGTAGCGCCTGTCAAAAGGCGTCGCATTATATGTGCTATACTTGCACGTACTCTTTGTGCAAGGGATGCACAAAAGATGCTGACTTTGTTTGTGTAAGAGAGAATAAAGGTTTGTGCGGAATATGCATGAGGACTATAATGCTGATTGAGAGAAGTGTCCAAGGAAACAAGGAAATGTGTGAAGTGGATTTCGATGACAAAGGCAGCTGGGAGTATCTTTTCAAGGTTTATTGGATGTATTTGAAAGGGAAGCTATCTTTAACATTTGATGAGCTCCTACGAGCTAAAAACCCTTGCAAAGGTGTTGCTCCTATGAGTTATAAGGTTCAAAGTCCCCATGAACTTTATCATCTTAGAGATGACAAAGGTTCTGGTTCCGAGAACTCTTGTATAGACATAGAATCAAATAATTTGAAGAACAAGAAGCCCAAGAGACAGCCAAAGCTTCTTGGCAAGGGTGATTTCCTGGACAGGATAGGTTCAGGGGGCGACAGAGATATGTCTTTGCCTGAGTGCACAAAGTGGGCATCGAAGGAGCTACTAGAGTTTGTTTCACATATGAAAAATGGTGATACATCTCTCCTGTCTCAATTTGATGTCCAGAATCTCTTGCTGGAGTATGTAACGAAAAATAATCTTCGTGATCCTCAACAAATGTCCGAAATTGTTTGTGATTCTAGACTACTAAGTTTGTTGGGAAAAGCTCGAGTTGGCCAAATTGAAATGCTAAAGCTCCTTGAATCCCATTTTCTTTTAAAAGACAATGGACCTGCAGAAAATACTTTTGGAGCAGGAATCATTAATACTGTTGCTAGTGAAGGGGAGGCCATTGACAATTACAATAAACAGTTGATGTTAGTTAATGACAAGAGATGTAAAACACATAATAAGGCTGATGTTCTAGTTCCGCTAAATAATCCAGATGCATATGCTGCAATAGATGTTCACAATCTTAACTTGATCTACTTGCGGCGATGTCTGATGGAGAATCTAACTGAAGATATTGAAAAGATTCATGAGAAGGTTGTGGGTTCATTTGTGCGGATAAGAATCTCTTGCAGTGATCAAAAACAAGATATGTATAGACTTGTCCAAGTTGTAGGTACAAGCAAGGTTGCTGAACCGTACAAAATTGGGACAAGAACAACTGATATTAAGCTTGAAATTTTAAACTTAAACAGGAAGGAGGTCATATCCATTGCGGAAATTTCTAATCAGGAGTTCTCCGAGGATGAATGCAAGCGGTTGCGTCAGAGTATAAAATATGGGCTCTCAAATAGATTGACTGTGGGAGAGATTCTAAACAAGGCATTAACACTTCAATCAATTAGAGTTAATGATTTGCTGGAAGCTGAGATATTGCGGCTTAGTCATCTTCGTGATAGAGCAAGTGAAAAGGGGCATCGAAAAGAATATCCTTTATGA 1821 0.4289 MDHPLHPLPEAAPNTARGFEDSRLVGPPLAPAGCADVPQKDVNSSVPNLEVTVVEGAVLKRKRGRPAKGAPKVAPLVRQKKDEEDVCFICFDGGSLVLCDRRGCPKAYHPTCIKRDEAFFRSKAKWNCGWHICSACQKASHYMCYTCTYSLCKGCTKDADFVCVRENKGLCGICMRTIMLIERSVQGNKEMCEVDFDDKGSWEYLFKVYWMYLKGKLSLTFDELLRAKNPCKGVAPMSYKVQSPHELYHLRDDKGSGSENSCIDIESNNLKNKKPKRQPKLLGKGDFLDRIGSGGDRDMSLPECTKWASKELLEFVSHMKNGDTSLLSQFDVQNLLLEYVTKNNLRDPQQMSEIVCDSRLLSLLGKARVGQIEMLKLLESHFLLKDNGPAENTFGAGIINTVASEGEAIDNYNKQLMLVNDKRCKTHNKADVLVPLNNPDAYAAIDVHNLNLIYLRRCLMENLTEDIEKIHEKVVGSFVRIRISCSDQKQDMYRLVQVVGTSKVAEPYKIGTRTTDIKLEILNLNRKEVISIAEISNQEFSEDECKRLRQSIKYGLSNRLTVGEILNKALTLQSIRVNDLLEAEILRLSHLRDRASEKGHRKEYPL* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g01756 606 Pfam Plus-3 domain 449 552 IPR004343 GO:0003677
Phac2g01756 606 ProSiteProfiles SWIB/MDM2 domain profile. 301 384 IPR003121 -
Phac2g01756 606 FunFam Zinc finger CCCH domain-containing protein 19 445 574 - -
Phac2g01756 606 MobiDBLite consensus disorder prediction 1 22 - -
Phac2g01756 606 SUPERFAMILY FYVE/PHD zinc finger 66 131 IPR011011 -
Phac2g01756 606 SUPERFAMILY Plus3-like 445 574 IPR036128 GO:0003677
Phac2g01756 606 ProSiteProfiles Zinc finger PHD-type profile. 84 150 IPR019787 -
Phac2g01756 606 FunFam Zinc finger CCCH domain-containing protein 19 76 176 - -
Phac2g01756 606 CDD PHD5_NSD 86 131 - -
Phac2g01756 606 Pfam SWIB/MDM2 domain 309 382 IPR003121 -
Phac2g01756 606 SUPERFAMILY SWIB/MDM2 domain 306 383 IPR036885 -
Phac2g01756 606 Gene3D - 445 574 IPR036128 GO:0003677
Phac2g01756 606 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 48 605 - -
Phac2g01756 606 SMART rtf1 444 554 IPR004343 GO:0003677
Phac2g01756 606 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 176 IPR013083 -
Phac2g01756 606 Coils Coil 578 598 - -
Phac2g01756 606 SMART PHD_3 86 132 IPR001965 -
Phac2g01756 606 ProSiteProfiles Plus3 domain profile. 444 577 IPR004343 GO:0003677
Phac2g01756 606 CDD SWIB-MDM2_like 307 382 - -
Phac2g01756 606 ProSitePatterns Zinc finger PHD-type signature. 87 147 IPR019786 -
Phac2g01756 606 Gene3D SWIB/MDM2 domain 296 390 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g01756 Phac-Chr2 19548104 19555447 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g01756 84 172 PHD Transcription Factor Family AT5G36670 31.868 4.25e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Phac2g01756 Plus-3 2.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g01756 - - vun:114173625 1118.99