Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g01689 ATGAGTGACAAAGAAAAGTTTGAGGTGGATAGAAGCGAGGATCCTATGGGTTATTCTAGTGGTATGCACTCGGATTGGAGATTTGGGGGTGCAAATCTGGCAAATTCTTCTGCTGGTTTGGTTGCCATGGGAAATTCTATGAATGCCAGCAGAGGGGATTTGATTGGTTCGTCTTCATGTTCCTCTGCTTCAATGGTGGACTCTTTTGGTCCAAGCTACTGGGACAACTCCACCGGCTCCCAAAACCTGGGATTTTGTGACTTTAATGTCCACAACGATGGGGGTTCTTCAAATACTGCCGGAATAAGAAAAGATGGCTTTGGCTTTGGAAGAGTAGGTCAGGATCATCATGGAACACTTGATATGGCTTGGAACCCTGCTAATTCTATGTTACCAAATGGCCCAGGGATGTTTCCGCACAGTTTATCTCAGTTTCCAACTGATTCTGGATTCATTGAGAGAGCTGCAAGATTCTCATGCTTCAGTGGAGGGAATTTTACTGATATGGTGAACTCATATGGTATTGCTCAGTCAACAGGGGTTTATGGAGCAAGAGATGCTATTGCAGGCCATGGGTTGAAATCTGTAACTGGAGGGCAATCTCAAGGAGGTGATATGAATGTAGTTGAAGCTACTAAAGATTTGTCTCCATCTGTGGAGCATCTGGCTTCTAAAGGAAGCCCTCTCAAGAGTGATAAAAGAAGTGAAGGTCATACTATGTGTCATGATGATAGGAAGCTATCTCTTGTTAGGCCAGCTAATGAGTCGGATAGAGCTGAATCTAGTGATGATGATGGTGGTGGCCAGGATGATTCTCCAATCTTGGAAGGTGCTAGTGGAGAGCCTTCTAATAAAGGGCTAAACTCAAAGAAAAGGAAAAGAAGTGGGCAGGATGCTGATAATGATATAGGCAATGGAGCTCCAGAAATTCCTAATGAAGCTACAAAGGACAACTCTGAGAATCAACAGAAGGTAGACCATCAACCAACTCCAGCAACCAAGTCTTTTGGGAAGAATGCCAAACTGGGGTCTCAAGCTTCTGATCAACCTAAGGAGGAATACATACATGTTAGGGCTCGCCGGGGTCAAGCAACAAATAGCCATAGCCTTGCAGAGAGGGTTAGGAGGGAAAAGATAAGTGAAAGGATGAAGTTTCTTCAAGACCTTGTACCGGGATGCAGCAAGGTCACTGGCAAGGCAGTAATGCTTGATGAAATCATCAACTATGTACAATCACTTCAGAGACAGGTTGAGTTTTTGTCTATGAAACTTGCAACAGTAAATCCGCGGCTGGAATTTAATATTGAAGGACTTCTTGGAAAAGATATTCTTCAACATCGGCCCGGTCCTTCTTCTGGACTAGGGTTTCCTCTAGATATATCCATGGCTTTTCCTCCAATACATCCATCTCAACCAGGGCTGATTCATCCTATTATTCCCAACATGGTAAACTCAGCTGACATTCTTCAAAGAAACATCCATCAACAGTTAGCTCCCTTGAATAGTGGGTTCAAGGAGCCAAATCAGGTATTGATCCATTGGAATATCAAGCATTTCTCATTCACAATGCACATAATTTCTCTGTTTGTGAGTAAACACGTCAAGTTTGGGTGCTACTGCTACATATATTAA 1632 0.4326 MSDKEKFEVDRSEDPMGYSSGMHSDWRFGGANLANSSAGLVAMGNSMNASRGDLIGSSSCSSASMVDSFGPSYWDNSTGSQNLGFCDFNVHNDGGSSNTAGIRKDGFGFGRVGQDHHGTLDMAWNPANSMLPNGPGMFPHSLSQFPTDSGFIERAARFSCFSGGNFTDMVNSYGIAQSTGVYGARDAIAGHGLKSVTGGQSQGGDMNVVEATKDLSPSVEHLASKGSPLKSDKRSEGHTMCHDDRKLSLVRPANESDRAESSDDDGGGQDDSPILEGASGEPSNKGLNSKKRKRSGQDADNDIGNGAPEIPNEATKDNSENQQKVDHQPTPATKSFGKNAKLGSQASDQPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLEFNIEGLLGKDILQHRPGPSSGLGFPLDISMAFPPIHPSQPGLIHPIIPNMVNSADILQRNIHQQLAPLNSGFKEPNQVLIHWNIKHFSFTMHIISLFVSKHVKFGCYCYIY* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g01689 543 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 361 431 IPR036638 GO:0046983
Phac2g01689 543 SMART finulus 369 419 IPR011598 GO:0046983
Phac2g01689 543 MobiDBLite consensus disorder prediction 217 351 - -
Phac2g01689 543 MobiDBLite consensus disorder prediction 312 346 - -
Phac2g01689 543 CDD bHLH_AtBPE_like 353 438 - -
Phac2g01689 543 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 253 467 IPR024097 GO:0006355
Phac2g01689 543 MobiDBLite consensus disorder prediction 226 265 - -
Phac2g01689 543 FunFam Basic helix-loop-helix transcription factor 360 432 - -
Phac2g01689 543 Gene3D - 360 434 IPR036638 GO:0046983
Phac2g01689 543 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 363 413 IPR011598 GO:0046983
Phac2g01689 543 Pfam Helix-loop-helix DNA-binding domain 366 414 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g01689 Phac-Chr2 18227722 18233520 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g01689 56 505 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 44.902 3.30e-104 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac2g01689 HLH 7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g01689 - - gmx:100797720 878.626