Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g01628 ATGAATCGAAGGTCAATTCGTTGCTCTGTGATTCGACAAAACAAAACCCTTACCCTTCGTTGTCTCATTCGTGACTCTTCATCATCTCCGATCAAGAGCTCTATACTCGGAGATCTTGTTGAAATGGCCGATTCTCCACCAAGAAGGAATTCAAGGTCCCCTTCCCCATGGAGGGCTCAGTCAAGATCGAGGTCAAGGTCTAGATCTAGGCCTAGGTCCCGGTCTAGATCATTTGAAAAACAAAGGCCACGATCCCGCTCAAGAAGTCGTGGAAGATCAAGATCAAGAAGTAATGATAGGACGGAGGCTAAAAATTCAGGGACTACACTTTATGTCACTGGCCTATCTTCAAGGGTCACTGAGAGAGACCTGGAGGAGCATTTCTCTAAGGAGGGAAAGGTTTCTTCTTGTTTTCTTGTGGTGGAGCCTCGCACTCGCATTTCTCGAGGTTTTGCTTTTATTACAATGGATAATGTTGAGGATGCAAACCGCTGCATCAAATATCTCAATCAATCAGTTTTAGAGGGTCGCTATATCACTGTTGAGCGGAATACATTGCTTCAGCTATTTTGGCAGCAATCAAAGATGATCAGTTCATCCATGTCAACTTTAGTGATACAGCTTGATCAATGGCAAGCTTAA 642 0.4408 MNRRSIRCSVIRQNKTLTLRCLIRDSSSSPIKSSILGDLVEMADSPPRRNSRSPSPWRAQSRSRSRSRSRPRSRSRSFEKQRPRSRSRSRGRSRSRSNDRTEAKNSGTTLYVTGLSSRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFITMDNVEDANRCIKYLNQSVLEGRYITVERNTLLQLFWQQSKMISSSMSTLVIQLDQWQA* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g01628 213 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 186 IPR000504 GO:0003723
Phac2g01628 213 SMART rrm1_1 109 182 IPR000504 GO:0003723
Phac2g01628 213 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 44 189 - -
Phac2g01628 213 Gene3D - 43 185 IPR012677 -
Phac2g01628 213 CDD RRM_SF 110 182 - -
Phac2g01628 213 SUPERFAMILY RNA-binding domain, RBD 59 183 IPR035979 GO:0003676
Phac2g01628 213 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 179 IPR000504 GO:0003723
Phac2g01628 213 MobiDBLite consensus disorder prediction 48 62 - -
Phac2g01628 213 MobiDBLite consensus disorder prediction 37 112 - -
Phac2g01628 213 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 98 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g01628 Phac-Chr2 16290999 16293991 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g01628 78 181 Eukaryotic Initiation Factors Gene Family AT4G34110 28.846 1.33e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g01628 K12897 - gmx:100527350 201.06