Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g01561 ATGGAAAGAGGCAGAGGCAGTTATGGTGACCGTGGCAGTGGTAGTTATGGTGGCGGTGACGGCAATGCTGGCCGCTACAATTCCCGTGACCGATACGGCAGTGCTGGTCGTAGCAGTTACGGCGGAGGTGACAGTTACAGTGGCCGTAGAGGAAGGTTTTACCAACGTCCTCAGCTAAGTAGTGGCAATGAACAAAGGTCTACTTCCCAACCACAACCACAAGCCCGGTGGCAACCGAAGGTAAACCCTTCTTCCGCTGGTGAATCTTCAGAACCTCACGCTTCTCAACCTCAAACTGAAACTGAAACTGAAAAACAGACTATTCAAAATCCAGAAGTTGGAGCTTTGAGGATATCAGAGCAGAAAGCAGAGAGTATCAGACCAATGCATAGGCCTGACAAAGGGGGAACAATGGCAGCACAGAGAAACGCGCTTGAGGTGAACCATTTCCATGTTGTGTTCGATGAAAAGAGAGTGATATTCCACTACGATGTGGACGTGAAGGCCAAGGCTCCGCCCATGAACAATCGGCCTCAGAAGATTTCCAAGTTTCATCTGTTGTTGATTCGGGATAAGCTGTTTTCCGATCACGCGTTCCCGAATTCGGCGTACGACGGCGAAAAGAACATGTTCAGCGCGGAGCGGTTGACGGAAGGAACCTTCGATGTGGAGGTGGTGAAAGGTGGGGACGCAAGAAGAATGGTTTGCTATTCCGTAACTCTTACACTTGTGAAGGTGCTTGAACTCCGCAAGTTGAGAGATTACTTGAGTGGAAAGGTTCTTTCGATTCCTAGAGATGTTTTACAGGGCTTGGATTTGGTAGCGAAGGAGAATCCCACGAAGCAGTGTGATATGGTTGGGTGCTGCTTCTTCCCCAAGGACCATCCCATAAGTCCGATAGACTCTAAAGGGATAATTGCAACAGGAGGGTTTCAGCAGAGTCTTAAGCCCACTTCTCAAGGCTTGTCCTTGTGCCTCGACTATTCCGTTTTATCGTATTTTGGGGAGGACAAACCGGTGTTGAAGTTTCTGCACGAACAGATTGAGAACTTCAACTTGAGGATGTTTCACAAGTTCAAGAAAAGAGTTGAGGATTTACTTGTCGGGTTGAAAGTTAATGTGACCCACCGGAGGACGAAGCAGAAATACACTATAACAAGGTTGACACCCATGGTTACGAGCAAGATCAGATTCCCTGTTTTGGACACTGATGGATGGATTCCAGAACCGGAGTGTAGTCTGATTGATTACTTTTTCAGGAAGCATCAGGTGGAGATTCAACACAAGGACATTCCTGCCTTGGATTTTGGAGGCAACAAGATGAATTATGTACCTATGGAGTTGTGTGTGTTGGTTAAGGATCAAATATGCCCCAAAGGTAACTTACTGAATACAGATGCTGGCAGTGTGTTGAGAAGCATGTCATTGGCTTCTGCAGGAGAGAGGCGAAATAAAATAAGAACTATAGTGAAATCAGAGGAAGGACCGTGTGGTGGTGGTGTTATTGAGAGTTTTGGAATGCGTGTACACACTTCCATGACAAAAGTGACTGGACGTGTAATTCAGCCCCCAGAATTGAAGATAGCTAATCGAAGTGGTGAGATTATTAGTATGGCACTGGAAGTGGGGAAACCTCAGTGGAGTCTAAAGGAAGGATCAATGGTTGAAGGCAAGCCGCTTAAATGTTGGGGCATTCTTTATTTTTCTGATTCCAAGTGCCAATTTAAAAGCGAGCAGTTCATTAAAAATCTTCGTAGGAAATGCGGATTACTCGGCATTGAAATGGGGAAGCCAGCTTGGTCTGAAGAATTTTCTATCTCGATTCTTCGCAAATACGATTCGCTGTGTGAATTACTTAAAGAAATTGATTGTCAGGTTCAACAAAAATGTGAACAACGGCTGCAGATTCTTCTTTGTGTGATGGCCGAGAAAGATTCAGGTTACAAGTGCCTCAAATGGATTGCTGAGACCAAGGTTGGGGTAGTGACACAATGCTGCTTACGTTCTCATGCTAATGATGCCAAGGACCACTTTCTTACAAATCTTGCCCTCAAAATGAATGCCAAAGTTGGAGGAAGTAATGTAGAGCTCATGAATAGGCTTCCAAACTTTGACGGCCAAGGTCATGTTATGTTCATAGGAGCTGATGTTAATCATCCAGCTTCCAGGGACATCAACAGCCCATCAATTGCTGCCGTAGTTGCCACTGTTAATTGGCCTGCTGCAAATCGCTATGCTGCACGTGTTTGTGCTCAACGTCATCGGGTTGAGAAAATTTTGAATTTTGGGAGAATTTGCCTTGAACTAGTTTCATATTACAATAGGTTGAACAAAGTGTGGCCAGAAAAAATTGTTATCTTTCGAGATGGCGTGAGCGAAAGTCAATTTCATATGGTTCTCACGGAAGAGTTGGAAGATTTGAAATCAGTGTTTCGTGATTCAAACCACTCGCCAACCATCACTCTTATTGTTGCACAAAAGCGACATCATACTCGATTTTTTGTGAAGGATCGAAATTTCAATGTGTTACCTGGAACAGTTGTGGACACAAAAGTAGTACATCCTTTTGAATTTGACTTCTACCTTTTTAGTCACAAGGGGATCTCGGGTACAAGCAAGCCCACTCACTATCATGTGTTATGGGATGAGCACAAATTTACATCTGATGATTTGCAGAAACTCATATACGAAATGTGCTTTACCTTTGCAAAGTGCACTGGACCTGTATCTTTAGTTCCTCCAGTGTACTATGCTGATCTAGCTGCATATAGAGGCCGGTTGTACTATGAAGCAATGAATGAAACCAAATCTGCTCGCTCTGCCACTACTCGATCTTCTTCGGCAGTTTCTAATTTAAATGATGAAGGGTGTTACAAGTTGCACCCCGATGTGGAAAACCTGATGTTCTTCATTTGA 2916 0.4441 MERGRGSYGDRGSGSYGGGDGNAGRYNSRDRYGSAGRSSYGGGDSYSGRRGRFYQRPQLSSGNEQRSTSQPQPQARWQPKVNPSSAGESSEPHASQPQTETETEKQTIQNPEVGALRISEQKAESIRPMHRPDKGGTMAAQRNALEVNHFHVVFDEKRVIFHYDVDVKAKAPPMNNRPQKISKFHLLLIRDKLFSDHAFPNSAYDGEKNMFSAERLTEGTFDVEVVKGGDARRMVCYSVTLTLVKVLELRKLRDYLSGKVLSIPRDVLQGLDLVAKENPTKQCDMVGCCFFPKDHPISPIDSKGIIATGGFQQSLKPTSQGLSLCLDYSVLSYFGEDKPVLKFLHEQIENFNLRMFHKFKKRVEDLLVGLKVNVTHRRTKQKYTITRLTPMVTSKIRFPVLDTDGWIPEPECSLIDYFFRKHQVEIQHKDIPALDFGGNKMNYVPMELCVLVKDQICPKGNLLNTDAGSVLRSMSLASAGERRNKIRTIVKSEEGPCGGGVIESFGMRVHTSMTKVTGRVIQPPELKIANRSGEIISMALEVGKPQWSLKEGSMVEGKPLKCWGILYFSDSKCQFKSEQFIKNLRRKCGLLGIEMGKPAWSEEFSISILRKYDSLCELLKEIDCQVQQKCEQRLQILLCVMAEKDSGYKCLKWIAETKVGVVTQCCLRSHANDAKDHFLTNLALKMNAKVGGSNVELMNRLPNFDGQGHVMFIGADVNHPASRDINSPSIAAVVATVNWPAANRYAARVCAQRHRVEKILNFGRICLELVSYYNRLNKVWPEKIVIFRDGVSESQFHMVLTEELEDLKSVFRDSNHSPTITLIVAQKRHHTRFFVKDRNFNVLPGTVVDTKVVHPFEFDFYLFSHKGISGTSKPTHYHVLWDEHKFTSDDLQKLIYEMCFTFAKCTGPVSLVPPVYYADLAAYRGRLYYEAMNETKSARSATTRSSSAVSNLNDEGCYKLHPDVENLMFFI* 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g01561 971 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 141 935 - -
Phac2g01561 971 Pfam Piwi domain 637 929 IPR003165 GO:0003676
Phac2g01561 971 SMART PAZ_2_a_3 338 470 IPR003100 GO:0005515
Phac2g01561 971 SUPERFAMILY PAZ domain 333 491 IPR036085 GO:0005515
Phac2g01561 971 Pfam Argonaute linker 1 domain 286 330 IPR014811 -
Phac2g01561 971 Pfam PAZ domain 346 460 IPR003100 GO:0005515
Phac2g01561 971 ProSiteProfiles Piwi domain profile. 636 930 IPR003165 GO:0003676
Phac2g01561 971 SMART DUF1785_2 284 336 IPR014811 -
Phac2g01561 971 ProSiteProfiles PAZ domain profile. 338 453 IPR003100 GO:0005515
Phac2g01561 971 CDD Piwi_ago-like 501 929 IPR045246 -
Phac2g01561 971 MobiDBLite consensus disorder prediction 54 114 - -
Phac2g01561 971 Gene3D - 520 698 - -
Phac2g01561 971 SUPERFAMILY Ribonuclease H-like 625 931 IPR012337 -
Phac2g01561 971 Pfam N-terminal domain of argonaute 145 274 IPR032474 -
Phac2g01561 971 CDD PAZ_argonaute_like 339 452 - -
Phac2g01561 971 SMART Piwi_a_2 636 930 IPR003165 GO:0003676
Phac2g01561 971 Gene3D paz domain 332 457 - -
Phac2g01561 971 Gene3D - 706 971 IPR036397 GO:0003676
Phac2g01561 971 MobiDBLite consensus disorder prediction 1 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g01561 Phac-Chr2 15291686 15295663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g01561 81 930 Eukaryotic Initiation Factors Gene Family AT1G48410 33.517 4.66e-135 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g01561 K11593 - gmx:100805250 1159.44