Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g01477 ATGGAAGGAAGTGGAAGAATCGATGAATGTGATAATGGCTTTTGTGGTTCTCCTACGGTAGTTCAGATTATACAGAAGGTACTTGCAGAGTTGATAGGGACATATTTCTTAATATTTGCTGGGTGTTGCTCTGTGATTCATAATAATTCAGAAAAGACTAAAGGGCAAATAACATTTCCTGGAGTTTGCATAGTGTGGGGTTTAACAGTAACCATCTTGGTTTATTCTCTTGCTCACGTCTCTGGTGCTCATTTCAATCCAGCAGTCACTCTCAGCTTTGCTATCTATCGTTTTATCCCTTTTAAAATGGTGCCTTTGTATTTTATTTCGCAAATATTAGGATCTTTCCTTGCTAGTGGGACATTATACCTTCTCCTTGAAATAGACGATAATTCTTATTTTGGAACAAAACCAGCAGGAGGTCATGTTCAATCTCTTGTTTTTGAGTTAATAGCAACATTTCTCTTAATGTTCGTTGTCTCTGCGGTTTCAACGGATAGAAGAGCGATTGGAAAATTTGGAGGGGTTGTTGTTGGTTTGACAGTTATGGTAGACGTCTTCGTTGCTGGACCTGTGTCAGGAGCTTCTATGAACCCAGCAAGAAGCCTTGGACCTGCTTTGGTGATGCATGTTTACAGTGGATTTTGGGTTTATATAGTTGGACCATTTGCTGGTGCGTTACTTGGTGCGACATGTTATAACTTGATTAGACACACTGATAAACCACTTAGGGATATTGGCTCCAATTCAACAATACTTCAAATAACATCTACAAGTTTTCGATAG 786 0.3906 MEGSGRIDECDNGFCGSPTVVQIIQKVLAELIGTYFLIFAGCCSVIHNNSEKTKGQITFPGVCIVWGLTVTILVYSLAHVSGAHFNPAVTLSFAIYRFIPFKMVPLYFISQILGSFLASGTLYLLLEIDDNSYFGTKPAGGHVQSLVFELIATFLLMFVVSAVSTDRRAIGKFGGVVVGLTVMVDVFVAGPVSGASMNPARSLGPALVMHVYSGFWVYIVGPFAGALLGATCYNLIRHTDKPLRDIGSNSTILQITSTSFR* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g01477 261 ProSitePatterns MIP family signature. 84 92 IPR022357 -
Phac2g01477 261 PRINTS Major intrinsic protein family signature 103 122 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phac2g01477 261 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phac2g01477 261 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phac2g01477 261 PRINTS Major intrinsic protein family signature 66 90 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phac2g01477 261 PRINTS Major intrinsic protein family signature 148 166 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phac2g01477 261 PRINTS Major intrinsic protein family signature 25 44 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phac2g01477 261 PANTHER AQUAPORIN NIP2-1 15 242 IPR034294 -
Phac2g01477 261 Gene3D Glycerol uptake facilitator protein. 11 246 IPR023271 -
Phac2g01477 261 SUPERFAMILY Aquaporin-like 21 242 IPR023271 -
Phac2g01477 261 Pfam Major intrinsic protein 21 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phac2g01477 261 CDD MIP 25 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Phac2g01477 261 NCBIfam MIP family channel protein 29 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g01477 Phac-Chr2 13337390 13338963 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g01477 4 261 Major Intrinsic Protein MIP AT5G37810 53.053 5.81e-98 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g01477 K09874 - gmx:100819179 395.201