Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g01463 ATGATTTCAAAGATGCCATCTCATGAATTATCCCAGCCACTGACTGAAGAAATTAGTCAGGTTCTTGCCAAATCCGTGGGTGGATTGTACAAACAACATAGCTGTCCTGAAAATTTATCAGAACTAGACAGCATTTCTAAGAACAATGGAGAGAATAATAGCAGCACTAATCGGGCTGGATCTCGCTTGGAAAGAGCAAGGAGCATCCATGCTTCTTCTGAAGTTTTCTTTTTGAATGAATCTGATCCTGAAAGTCAAGAAATTTCTGACACAAAGAGTCTCCCTGAGGTTAAAAAGCCTGAAGCAATTGTGATTCCTGAAGATTTTCTTTGCCCTATATCCTTGGAACTAATGAGGGATCCTGTTATTGTGGCGACTGGTCAGACGTATGAGAGATCTTACATACAGAGATGGATAGATTGTGGAAATACAACATGTCCGAAAACTCAGCAGAAGCTCCAACATTTGACCCTCACACCAAATTATGTTTTAAGGAGCCTTATTTATCAGTGGTGTATAGAGCACAACATTGAGCAGCCAACAGGACTAACCAATGGGAAAATAAAGAAGAGTGATGGGTCGTTCAGAGACGTTACAGGTGACATAGCAGCAATTGAAGCTCTGGTGCGGAAGCTCTCCAGTCGGTCTGTTGAGGAGCGTAGAGCAGCTGTCACCGAAATTCGATCACTATCCAAACGTAGTACTGACAATAGGATACTAATTGCTGAAGCTGGAGCAATTCCAGTTCTAGTCAACCTTCTAACATCAGAAGATGTACTGACGCAAGACAATGCTGTTACATCAATTCTAAACCTTTCCATTTATGAAAATAACAAAGGACTTATAATGCTTGCTGGTGCCATTCCATCCATTGTCCAAGTCCTCCGTGCTGGAACCATGGAAGCAAGAGAAAATGCAGCAGCAACCCTTTTCAGCTTGTCACTTGCAGATGAGAACAAAATCATAATTGGTGCGTCAGGAGCCATACCCGCTTTGGTAGAATTGCTCCAAAACGGGAGTCCTAGAGGAAAGAAGGATGCCGCAACAGCATTATTCAATTTATGCATTTATCAAGGGAACAAGGGCAGGGCCATTCGGGCAGGGATCATCACAGCATTGTTGAAAATGCTTACTGATTCAAGCAAATTAATGGTTGACGAAGCCCTAACAATAATGTCAGTTCTTGCCAGCCACCAAGAGGCAAAAATTGCTATAGTAAAAGCCAGCACTATACCAGTTTTGATAGATCTTTTGAGGACCGGATTACCTCGCAATAAAGAGAATGCAGCTGCTATTCTTCTTGCCTTGTGCAAGAGGGATGCCGATAATCTTGCTTGTATAAGTAGACTTGGTGCCGTCATACCTCTTTCTGAACTTGCTCGAACTGGTACAGAGAGGGCCAAACGGAAGGCTACTTCATTACTGGAGCATCTTCGTAAGTTGCAGCAACTTTGA 1455 0.4268 MISKMPSHELSQPLTEEISQVLAKSVGGLYKQHSCPENLSELDSISKNNGENNSSTNRAGSRLERARSIHASSEVFFLNESDPESQEISDTKSLPEVKKPEAIVIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNTTCPKTQQKLQHLTLTPNYVLRSLIYQWCIEHNIEQPTGLTNGKIKKSDGSFRDVTGDIAAIEALVRKLSSRSVEERRAAVTEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVLTQDNAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRAGTMEARENAAATLFSLSLADENKIIIGASGAIPALVELLQNGSPRGKKDAATALFNLCIYQGNKGRAIRAGIITALLKMLTDSSKLMVDEALTIMSVLASHQEAKIAIVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDADNLACISRLGAVIPLSELARTGTERAKRKATSLLEHLRKLQQL* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g01463 484 SUPERFAMILY ARM repeat 204 478 IPR016024 -
Phac2g01463 484 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 245 287 IPR000225 GO:0005515
Phac2g01463 484 MobiDBLite consensus disorder prediction 41 62 - -
Phac2g01463 484 Gene3D - 283 383 IPR011989 -
Phac2g01463 484 ProSiteProfiles U-box domain profile. 104 178 IPR003613 GO:0004842|GO:0016567
Phac2g01463 484 Pfam U-box domain 105 176 IPR003613 GO:0004842|GO:0016567
Phac2g01463 484 MobiDBLite consensus disorder prediction 41 64 - -
Phac2g01463 484 Gene3D - 384 483 IPR011989 -
Phac2g01463 484 FunFam RING-type E3 ubiquitin transferase 384 483 - -
Phac2g01463 484 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 286 328 IPR000225 GO:0005515
Phac2g01463 484 SMART arm_5 357 397 IPR000225 GO:0005515
Phac2g01463 484 SMART arm_5 234 274 IPR000225 GO:0005515
Phac2g01463 484 SMART arm_5 316 356 IPR000225 GO:0005515
Phac2g01463 484 SMART arm_5 275 315 IPR000225 GO:0005515
Phac2g01463 484 SMART arm_5 398 438 IPR000225 GO:0005515
Phac2g01463 484 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 327 369 IPR000225 GO:0005515
Phac2g01463 484 Gene3D - 186 282 IPR011989 -
Phac2g01463 484 SUPERFAMILY RING/U-box 104 179 - -
Phac2g01463 484 Coils Coil 464 484 - -
Phac2g01463 484 FunFam RING-type E3 ubiquitin transferase 183 383 - -
Phac2g01463 484 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 178 IPR013083 -
Phac2g01463 484 FunFam RING-type E3 ubiquitin transferase 104 179 - -
Phac2g01463 484 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 203 245 IPR000225 GO:0005515
Phac2g01463 484 PANTHER U BOX DOMAIN-CONTAINING 58 480 - -
Phac2g01463 484 Pfam Armadillo/beta-catenin-like repeat 317 355 IPR000225 GO:0005515
Phac2g01463 484 Pfam Armadillo/beta-catenin-like repeat 235 273 IPR000225 GO:0005515
Phac2g01463 484 CDD RING-Ubox_PUB 106 158 IPR045210 -
Phac2g01463 484 SMART Ubox_2 108 171 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g01463 Phac-Chr2 12984370 12988089 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g01463 76 480 U-box Gene Family AT1G71020 74.265 0.0 599
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g01463 - - gmx:100815448 848.966