Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g01381 ATGAATCGTAAGCGAGACAGGCACTATTTTTACCGCCAGGACGCCGCCGCCAAGCGCCGACGCCCCTTACCAGAGCCCGTGGAGGAGGAGAGACCGACGACGAGGCCTGCGCCGCCTTCCGCGGTGGTCGTGATGGGCCTCCCTCAAGACTGCTCCGTCCTCGATCTCAAGTCTCGCTTCGAGATCTACGGCGCCATCTCCCGCATCCGCATTGACCGCGATGCCGTCGGCTACATTACCTACCGGTCAAAGGACTCCGCCGACGCCGCCATAGCCGCCGGTGTTGACCCCTCCTTCGGAATCACCGTTAGCTCCAAAAAGGTTCAGGTGTTGTGGGCAACAGACCCTCTAGCCATGTGGAGGGAAGGAGTTGGTAATAGGAAGGATAAAGGGTATATGTCAAAGCTTGTGCGTGCTGAGGCACCTTTGAGCAAGCATGGAAGAGGTAATAGACTTGCTTCAGCTACAGGGAACACTAAAGATGGTGAGAATAGCTCAGGTAGCTCAGTTTCAGAAGTGCCTTTCAAGGGCCGAGAAATTGCGCAAACTAGAGTGTGTGAGATTGTGAAGACAGTGCAGAGACATAAAGCGGTGATGGAAGAATCCGAAAAAACAGAGACAGAACAAGTTGTGTGGAGTTGGGGTGCTGGAACCGAGGGTCAGTTGGGAACAAAGATTTTTGAGGATGAGGTCTTCCCTCAACTCCTTCACCAACCCTCTCTCTCTTCTATCTCTTCTCTTGCATGTGGCGGCGCTCATGTCATAGCCTTGACCTCTGCTGGGAAGGTACTTTCATGGGGTAGGGGAAATTCTGGGCAACTAGGCCATGGGGAGGTTCTGAGTAACGCTTTGTTTCCTAAGGCTGTAACGTCATTGGATTGCTACTTCATAACCCATGTCGCTGCTGGGTGGAGCCACTCAGGTTTTGTTTCAGATACTGGGTGTGTCTTCACTTGTGGGGATGGCACGTTTGGTCAACTGGGTCATGGCGATTATGCTTCACAGTGTTCTCCTGTCAAATTGTCATGCTTTGTTGATCAGCGTGTTGAGCAGGTTGCATGTGGAATGCGCCATTCCCTTGTCTTGATGAAAGATTGTGTAGGAAATCAAGTTTATGGATTTGGCTCTGGGAAGCGTGGTCAGCTCGGTGTCAGCAACGATAAGGTCAAATCTGTTAATGTTCCAAGAGTTGTTAGTGGCTTTGAAGGTGTTGAAATCTTTGGAATTGCTGCAAATGGTGATCATAGTGCAGCAGTATCTGTTGATGGGCATGTTTATACCTGGGGAAGAGGCTTCAAGGGCTTTGAAGATGCTCATGTTCCTCATTGCTTAAGCTCTTCATTGAAATTTATCAAAGTTGCTCTGGGATGGAACCATGCTTTAGTTATGACTGGTGAGGGAGAGGTTTATATGCTAGGTGGAAACCACCTTGGGGTGCTTAGTGATCTTCAGAACATAAGCCCCCGGTCCAGTCATTTACCTGTTCTCAATGGCTTCTGGCGACCAAAGAATCATCCAATGCGTAAAATTATTAGATCATGGCACTGCATAAATTCATTGGTAATTTATTGGGGGTGA 1578 0.4956 MNRKRDRHYFYRQDAAAKRRRPLPEPVEEERPTTRPAPPSAVVVMGLPQDCSVLDLKSRFEIYGAISRIRIDRDAVGYITYRSKDSADAAIAAGVDPSFGITVSSKKVQVLWATDPLAMWREGVGNRKDKGYMSKLVRAEAPLSKHGRGNRLASATGNTKDGENSSGSSVSEVPFKGREIAQTRVCEIVKTVQRHKAVMEESEKTETEQVVWSWGAGTEGQLGTKIFEDEVFPQLLHQPSLSSISSLACGGAHVIALTSAGKVLSWGRGNSGQLGHGEVLSNALFPKAVTSLDCYFITHVAAGWSHSGFVSDTGCVFTCGDGTFGQLGHGDYASQCSPVKLSCFVDQRVEQVACGMRHSLVLMKDCVGNQVYGFGSGKRGQLGVSNDKVKSVNVPRVVSGFEGVEIFGIAANGDHSAAVSVDGHVYTWGRGFKGFEDAHVPHCLSSSLKFIKVALGWNHALVMTGEGEVYMLGGNHLGVLSDLQNISPRSSHLPVLNGFWRPKNHPMRKIIRSWHCINSLVIYWG* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g01381 525 Pfam Regulator of chromosome condensation (RCC1) repeat 261 309 IPR000408 -
Phac2g01381 525 Pfam Regulator of chromosome condensation (RCC1) repeat 370 419 IPR000408 -
Phac2g01381 525 Pfam Regulator of chromosome condensation (RCC1) repeat 314 362 IPR000408 -
Phac2g01381 525 Pfam Regulator of chromosome condensation (RCC1) repeat 211 257 IPR000408 -
Phac2g01381 525 PRINTS Chromosome condensation regulator RCC1 signature 412 430 IPR000408 -
Phac2g01381 525 PRINTS Chromosome condensation regulator RCC1 signature 300 316 IPR000408 -
Phac2g01381 525 PRINTS Chromosome condensation regulator RCC1 signature 211 227 IPR000408 -
Phac2g01381 525 PRINTS Chromosome condensation regulator RCC1 signature 261 277 IPR000408 -
Phac2g01381 525 PRINTS Chromosome condensation regulator RCC1 signature 316 330 IPR000408 -
Phac2g01381 525 MobiDBLite consensus disorder prediction 7 32 - -
Phac2g01381 525 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 261 313 IPR000408 -
Phac2g01381 525 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 369 422 IPR000408 -
Phac2g01381 525 SUPERFAMILY RCC1/BLIP-II 211 482 IPR009091 -
Phac2g01381 525 SUPERFAMILY RNA-binding domain, RBD 27 119 IPR035979 GO:0003676
Phac2g01381 525 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 423 466 IPR000408 -
Phac2g01381 525 Gene3D - 367 515 IPR009091 -
Phac2g01381 525 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 92 IPR000504 GO:0003723
Phac2g01381 525 SMART rrm1_1 41 111 IPR000504 GO:0003723
Phac2g01381 525 MobiDBLite consensus disorder prediction 1 39 - -
Phac2g01381 525 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 352 362 IPR000408 -
Phac2g01381 525 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 115 IPR000504 GO:0003723
Phac2g01381 525 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 314 365 IPR000408 -
Phac2g01381 525 Gene3D - 2 117 IPR012677 -
Phac2g01381 525 CDD RRM_SF 42 93 - -
Phac2g01381 525 MobiDBLite consensus disorder prediction 145 174 - -
Phac2g01381 525 Gene3D - 144 366 IPR009091 -
Phac2g01381 525 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 286 484 - -
Phac2g01381 525 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 209 260 IPR000408 -
Phac2g01381 525 MobiDBLite consensus disorder prediction 151 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g01381 Phac-Chr2 11789361 11794112 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g01381 1 173 Homeobox Transcription Factor Family AT1G27050 51.813 1.69e-50 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g01381 - - gmx:100793672 791.186