LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac2g01380	ATGGCGGGTGGCAAGCTTCATCCTGGTTCAAACATGTCACTTCTCCTCCAAAACGACAGGCTCCCTTGCTCCTCTGAAGTCCTTGAGTCTCTTTGGGCTCACACCTCTAACGCTGCTTCCTTCCAAGGTTCAAAATCTATGGTTGATTTTGAGAATGTTAGTGGGGGCAGGGTGACGGATAGGCCCTTTTTTCAAGCGTTGGAGAAGGAAGATAACTGTGATGATGATTATGAGGGTTGCTTCCATCAACCGGGTAAGAAAAGGAGGCTCACAAGCGAACAAGTTCAGTTCCTTGAAAGGAACTTTGAGGTCGAGAACAAGCTTGAACCTGAAAGGAAGGTCCAACTTGCAAAGGAGCTTGGCTTGCAGCCAAGGCAAGTGGCTATATGGTTCCAAAACCGAAGGGCAAGGTTCAAGACCAAGCAGCTAGAAAAAGATTATGGCACATTGAAAGCTAGTTATGACAGACTCAAAGGTGACTATGAAAGTCTTCTTCAAGAGAATGACAAGTTAAAAGCAGAGGTGAATTCTCTGGAGAGCAAATTGATTCTTAGAGATAAAGAGAAGGAGAATTCGGACGACAAGTCATCTCCTGATGCTGTCAATTCACCCCACAAAGAGCCTATGGATTTAATTTCAAATTCAACATCTGAAAATGGGACCAAAGTGTCACTCCCTATTATGGTAACATGCAAGCAAGAAGATGCCAATTCAGCCAAAAGTGATGTGCTTGATTCGGACAGCCCACATTGCACTGATGGGAACCATCCCTCTTCATTCGTGGAGCCTGCTGATTCCTCCCATGCTTTTGAACCAGACCACTCCGACTTCTCCCAAGATGAAGAGGATAATCTTAGTGAAAGCCTTTTGACTCTCCCTTGCTTACCAAAGGTTGAAGAAGCCTGCTATGATGACCCTCCTGAAAACCCTTGTAATTTTGGCTTCCATGTCGAGGATCAAACCTTCTGTTTCTGGCCCTATTGA	984	0.4512	MAGGKLHPGSNMSLLLQNDRLPCSSEVLESLWAHTSNAASFQGSKSMVDFENVSGGRVTDRPFFQALEKEDNCDDDYEGCFHQPGKKRRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYGTLKASYDRLKGDYESLLQENDKLKAEVNSLESKLILRDKEKENSDDKSSPDAVNSPHKEPMDLISNSTSENGTKVSLPIMVTCKQEDANSAKSDVLDSDSPHCTDGNHPSSFVEPADSSHAFEPDHSDFSQDEEDNLSESLLTLPCLPKVEEACYDDPPENPCNFGFHVEDQTFCFWPY*	328

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac2g01380	327	PRINTS	Lambda-repressor HTH signature	121	137	IPR000047	GO:0003677
	Phac2g01380	327	PRINTS	Lambda-repressor HTH signature	112	121	IPR000047	GO:0003677
	Phac2g01380	327	Pfam	Homeodomain	86	139	IPR001356	GO:0003677
	Phac2g01380	327	CDD	homeodomain	84	142	IPR001356	GO:0003677
	Phac2g01380	327	SUPERFAMILY	Homeodomain-like	76	143	IPR009057	-
	Phac2g01380	327	ProSitePatterns	'Homeobox' domain signature.	116	139	IPR017970	GO:0000981\|GO:0006355
	Phac2g01380	327	SMART	HOX_1	83	145	IPR001356	GO:0003677
	Phac2g01380	327	MobiDBLite	consensus disorder prediction	183	220	-	-
	Phac2g01380	327	Gene3D	-	80	147	-	-
	Phac2g01380	327	Pfam	Homeobox associated leucine zipper	141	182	IPR003106	GO:0006355\|GO:0043565
	Phac2g01380	327	MobiDBLite	consensus disorder prediction	238	285	-	-
	Phac2g01380	327	FunFam	Homeobox-leucine zipper protein HAT5	79	143	-	-
	Phac2g01380	327	Coils	Coil	154	181	-	-
	Phac2g01380	327	MobiDBLite	consensus disorder prediction	183	201	-	-
	Phac2g01380	327	ProSiteProfiles	'Homeobox' domain profile.	81	141	IPR001356	GO:0003677
	Phac2g01380	327	PANTHER	HOMEOBOX-LEUCINE ZIPPER PROTEIN	68	229	IPR045224	GO:0003700
	Phac2g01380	327	MobiDBLite	consensus disorder prediction	267	281	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac2g01380	Phac-Chr2	11730842	11734086	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac2g01380	43	274	Homeobox Transcription Factor Family	AT3G01470	42.735	5.74e-46	155

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-HD-ZIP	Phac2g01380		Homeodomain	3.9e-16	CL0123