Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g01360 ATGACTAAATTATGCAGCATCTTTTTTTTAACCTGTTTGGTAGTCACCATACCTACCTTCTATGCGAATGTCTTAGAGGATGAGGAGTTTTTGAATAATCAAACTAAATCATTTGATGGATATTGGAAGGGAAGAAAACAAGTTGCAGAAAAACAGAACCAGGAAGCTTATATTACTGACCCATATTCTTTCACCATGAACATGACCAATAATATTTCCGACCTCATAACTGGTGAGGAAAAGGGAAGAAGGAATTTGGCGGGAAAACAATTACAGGATTCATGCTTGGCAACAAACCCGATTGACAGATGTTGGAGGTGTGACCCCAAATGGGCAGAGAACCGCAAGAAGCTGGCAGATTGTGTGCAAGGTTTTGGCAGAGACACTATTGGTGGAAAGAAGGGTCCATTCTATGTGGTAACCAGTAACTTAGATAATGACATGGTGAATCCTGTTCCTGGTACCCTTAGGCATGCGGTTACACGAAATGGACCCTTGTGGATCATCTTTTCTCATAGCATGAAAATTAGGCTCAGCCAGGAGCTCATCGTGGCTGGTGACAAGACCATTGATGGAAGAGGAGCTGATATCTACATTGTCAATGGAGCTGGTTTTACCATCCAATTCGTCAAGAATGTGATCATCCATGGAATCAAAATTTTTGACATTTACGCAGGCCAGGGTGGACTTATCAGAGATTCTGAGAGCCACTATGGTATAAGGACCCAGAGTGATGGTGATGGAATTTCCATCTTTGGCTCTAGTTATGTTTGGATTGACCATGTTTCCATGAGAAACGCCAGAGATGGATTGATTGATGCCATTCAGGGCTCCACTGCTATTACCATCTCCAATAGCCATTTCACAGACCACAACGAGGTGATGCTGTTTGGTGCTAGTGACAGCTATGACGGTGATAAGATAATGCAGATCACTCTGGTATTCAACCACTTTGGTAAGAGATTAGTCCAAAGGATGCCGAGATGCAGATATGGTTTTATCCATGTAGTTAACAACGACTACACTCATTGGGAAATGTATGCCATTGGTGGTAGCAAGCATCCTACAATTATTAGTGAGGGCAACCGATTCGTAGCCCCAAACAGCAAAGATGCTAAACAGATAACAAAGAGGGAATACACACTTGAGCAAGAGTGGAAAAAATGGCAATGGAGATCAATCAACGATGAGCTAATTAATGGAGCTTTTTTCATAGAAAGTGGGCCAGTTCTAACCAACAGACCCTTCACAAGGAAGGACATGATATCCGCCAAGCCTGGCACATATGTGGGAAGGCTCACTCGCCATGCTGGAAGCCTTCGATGCATTGTGGGCAAGCCTTGTTAG 1347 0.4306 MTKLCSIFFLTCLVVTIPTFYANVLEDEEFLNNQTKSFDGYWKGRKQVAEKQNQEAYITDPYSFTMNMTNNISDLITGEEKGRRNLAGKQLQDSCLATNPIDRCWRCDPKWAENRKKLADCVQGFGRDTIGGKKGPFYVVTSNLDNDMVNPVPGTLRHAVTRNGPLWIIFSHSMKIRLSQELIVAGDKTIDGRGADIYIVNGAGFTIQFVKNVIIHGIKIFDIYAGQGGLIRDSESHYGIRTQSDGDGISIFGSSYVWIDHVSMRNARDGLIDAIQGSTAITISNSHFTDHNEVMLFGASDSYDGDKIMQITLVFNHFGKRLVQRMPRCRYGFIHVVNNDYTHWEMYAIGGSKHPTIISEGNRFVAPNSKDAKQITKREYTLEQEWKKWQWRSINDELINGAFFIESGPVLTNRPFTRKDMISAKPGTYVGRLTRHAGSLRCIVGKPC* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g01360 448 Pfam Pectate lyase, N terminus 37 86 IPR007524 GO:0030570
Phac2g01360 448 Gene3D - 98 441 IPR012334 -
Phac2g01360 448 SUPERFAMILY Pectin lyase-like 99 439 IPR011050 -
Phac2g01360 448 PANTHER PECTATE LYASE 18-RELATED 49 446 IPR045032 GO:0030570
Phac2g01360 448 Pfam Pectate lyase 183 364 IPR002022 -
Phac2g01360 448 SMART amb_all 173 370 IPR002022 -
Phac2g01360 448 PRINTS Pollen allergen Amb family signature 347 366 IPR018082 -
Phac2g01360 448 PRINTS Pollen allergen Amb family signature 145 170 IPR018082 -
Phac2g01360 448 PRINTS Pollen allergen Amb family signature 325 344 IPR018082 -
Phac2g01360 448 PRINTS Pollen allergen Amb family signature 389 413 IPR018082 -
Phac2g01360 448 PRINTS Pollen allergen Amb family signature 181 197 IPR018082 -
Phac2g01360 448 PRINTS Pollen allergen Amb family signature 245 266 IPR018082 -
Phac2g01360 448 PRINTS Pollen allergen Amb family signature 121 138 IPR018082 -
Phac2g01360 448 PRINTS Pollen allergen Amb family signature 419 442 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g01360 Phac-Chr2 11355551 11358416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g01360 7 448 Polysaccharide Lyase AT1G14420 57.112 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g01360 K01728 - gmx:100796307 732.25