Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g01354 ATGTCTCAGGTTCTTCGCTCCCTTTTCACCTTAAAGCATCTCTCACTACCGTTCCAGTCTTTTGTTCCTCCAAAGTTCATTGTTCCTTTGAACCGGAACTTTTCTTTCATTTTCCCAACATCACTATCTGTCAGATGCAACCACTCCAACCTCGTTGAACCATTCCCACCACTGCCACAAAATCCTCCAGTTACAGAATTGCCGCGAAGGGTGTACGCAGATTACTCCGTTTACACATCGAAGGGTGTTCTCACCTTGGCTCCTAAACCTCCGGGATTTGAATCAAAAGCCTCTGGGGCGTTTGGGGTGTCTAGGGAAGGTTATATGTTGCTCCAGTTTGCTCCTTCGGTTGGTACTGAAGAATCCATATATGATTGGAACCAAAAGCAGGTATTCTCACTTTCGGTTAGTGAAATGGGAACTGTAATTAGCCTTGGTGCAAAGGATTCTTGGGAATTTTCTCGTAAGATTACTAAGGCAAATAGCAATGAAGTCAGAAAAGTTTTGAAGGTGGAGCCACTTCTGGATGCTACTGGTCACTCATTTAGCTTAAGTGTTTATAAAAAACCTGCGAACATGGAGGAAATTGAGGAAAACATCTATCTCCCTGTTACAAGGGCACATCTAGCAGTTTTAAGGTCAATTTTCAATTATATCATGCCGTACCTTCTAGGTTGGAATGCCTTTGCAAGCACCGTAAAGCCAGAGGTATATAGTCAAGTAAACAGTGCCAACCCCAGATACAGTGCAAACAATGAACGGAAAAGATAG 771 0.4306 MSQVLRSLFTLKHLSLPFQSFVPPKFIVPLNRNFSFIFPTSLSVRCNHSNLVEPFPPLPQNPPVTELPRRVYADYSVYTSKGVLTLAPKPPGFESKASGAFGVSREGYMLLQFAPSVGTEESIYDWNQKQVFSLSVSEMGTVISLGAKDSWEFSRKITKANSNEVRKVLKVEPLLDATGHSFSLSVYKKPANMEEIEENIYLPVTRAHLAVLRSIFNYIMPYLLGWNAFASTVKPEVYSQVNSANPRYSANNERKR* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g01354 256 Pfam Whirly transcription factor 77 215 IPR013742 GO:0003697|GO:0006355|GO:0006952
Phac2g01354 256 SUPERFAMILY ssDNA-binding transcriptional regulator domain 70 253 IPR009044 GO:0003677|GO:0006355
Phac2g01354 256 Gene3D Transcriptional Coactivator Pc4; Chain A 65 244 IPR009044 GO:0003677|GO:0006355
Phac2g01354 256 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 62 247 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g01354 Phac-Chr2 11292477 11297943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g01354 63 256 Whirly Transcription Factor Family AT1G14410 51.531 5.82e-65 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Phac2g01354 Whirly 2.6e-40 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g01354 K26559 - pvu:PHAVU_002G089800g 486.878