Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g01231 ATGGCCAGCGACTCGTCGTTTTTGTTTTCCGGCATTCGTTTCGACAGAAAGAAGTTTGGCGCCGATATCGCCAGGTTCCAGAAAAAGGACAGCGATACTGATTCGGTGAAGATTTGGAGCGTTGCCGAAGACGAAAGCGCGAAAACGAGGGAAGCAGTAGAAGAGAAAACAACGTCCACGAAGAAGAGGAAGCGCAAGGGAAACTCTTCCGAAACTGTTGAAGGATTCAACGTGTTTAGAAATTCCGCATCTGTGGTGCAGTCCAGTGGTGAAGTTCAAGCTGATGAGGAGTCTATTGAGCTGAATAAAAAGAAGAATAAGAAGGAAAAAAATCGTCAACTCGAGCGGGACGTGATATTCAGAAAGCAGCACAACATTCATGTCTCTGGTTATAATGTACCGTCTCCTCTTCAAAGCTTTGACGAGTTGAAAACAAGATATAACTGTCCATCGTATTTGTTGCGCAATCTGAAGGAGCTTGGATTCAAACTTCCAACGCCTATTCAAAGACAGGCTATTCCAGTACTTTTAGATGGTCGTGAATGCTTTGCGTGTGCACCAACTGGTTCTGGGAAAACCCTTGCATTTGTATGTCCAATGTTAATGAAGCTTAAGGACCCAGAAAGAGGTGGCATTCGAGCTGTCATCCTTTGTCATACCCGTGAATTGTCTGCTCAGATATTTCGAGAGTGCAAAAAGCTTGCCAAAAGAAAAAAATTTCGTATTAAGTTAATGACTAAAAATCTCTTAAGAAATGCTGATTTTTCAAAGTTTCCATGTGATATACTAATATCTACACCACTCCGATTACGCTTGGCTATCAAGAAGAAGAAGATTGATCTCAGCAGAGTTGATTATCTTGTCCTTGATGAATCGGATAAGCTTTTTGAGCCTGAATTATTTAAACAGATTGATTCTGTTCTCAAGGCATGCTCCAACCCATCAATCATACGCTCACTTTTCAGTGCTACTTTACCTGATTTTGTTGAGGATCGAGCTCGAGAACTTATGCATGATGCTGTTCGTGTAATTGTTGGCAGGAAGAATATGGCTTCTGAAACGATAAAGCAAAAATTGGTTTTTACTGGAAGTGAAGAAGGAAAACTTCTTGCAATTCGTCAAAGTTTTGCAGAGAGTCTAAATCCTCCAGTATTGGTTTTTCTCCAAAGCAAGGAACGAGCCAAGGAGCTGTACGGCGAACTTGCATTTGACAACATTAGAGTTGATGTCATTCATTCTGATTTGTCTCAACAAGAGCGAGAAAATGCTGTTGATAACTTCAGAGCTGGAAAAACATGGGTTTTGATTGCTACTGATGTGGTTGCCCGGGGCATGGATTTCAAAGGTGTGAACTGTGTGATCAATTATGATTTCCCTGATTCTGCCTCCGCATATGTCCACAGAATTGTTGTTTTCATTAGGTCGTTCTGGCAGAGCAGGGAGGACTGGAGAAGCTATTACTTTTTACACAGAGGATGA 1479 0.4165 MASDSSFLFSGIRFDRKKFGADIARFQKKDSDTDSVKIWSVAEDESAKTREAVEEKTTSTKKRKRKGNSSETVEGFNVFRNSASVVQSSGEVQADEESIELNKKKNKKEKNRQLERDVIFRKQHNIHVSGYNVPSPLQSFDELKTRYNCPSYLLRNLKELGFKLPTPIQRQAIPVLLDGRECFACAPTGSGKTLAFVCPMLMKLKDPERGGIRAVILCHTRELSAQIFRECKKLAKRKKFRIKLMTKNLLRNADFSKFPCDILISTPLRLRLAIKKKKIDLSRVDYLVLDESDKLFEPELFKQIDSVLKACSNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRKNMASETIKQKLVFTGSEEGKLLAIRQSFAESLNPPVLVFLQSKERAKELYGELAFDNIRVDVIHSDLSQQERENAVDNFRAGKTWVLIATDVVARGMDFKGVNCVINYDFPDSASAYVHRIVVFIRSFWQSREDWRSYYFLHRG* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g01231 492 Gene3D - 351 469 IPR027417 -
Phac2g01231 492 MobiDBLite consensus disorder prediction 87 112 - -
Phac2g01231 492 CDD SF2_C_DEAD 355 469 - -
Phac2g01231 492 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 280 469 IPR027417 -
Phac2g01231 492 Gene3D - 117 350 IPR027417 -
Phac2g01231 492 SMART ultradead3 161 358 IPR014001 -
Phac2g01231 492 MobiDBLite consensus disorder prediction 45 73 - -
Phac2g01231 492 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 142 170 IPR014014 GO:0003724
Phac2g01231 492 Pfam Helicase conserved C-terminal domain 373 469 IPR001650 -
Phac2g01231 492 Pfam DEAD/DEAH box helicase 166 330 IPR011545 GO:0003676|GO:0005524
Phac2g01231 492 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 120 346 IPR027417 -
Phac2g01231 492 CDD DEADc_DDX52 153 346 IPR044764 GO:0003724|GO:0005524|GO:0030490
Phac2g01231 492 MobiDBLite consensus disorder prediction 45 70 - -
Phac2g01231 492 MobiDBLite consensus disorder prediction 96 112 - -
Phac2g01231 492 PANTHER RNA HELICASE 64 469 - -
Phac2g01231 492 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 354 492 IPR001650 -
Phac2g01231 492 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 173 343 IPR014001 -
Phac2g01231 492 SMART helicmild6 395 471 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g01231 Phac-Chr2 8915437 8921168 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g01231 136 469 Eukaryotic Initiation Factors Gene Family AT3G19760 29.464 1.56e-41 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g01231 K14779 - gmx:100800969 816.224