Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g01230 ATGGCCAGCGACTCGTCGTTTTTGTTTTCCGGCATTCGTTTCGACAGAAAGAAGTTTGGCGCCGATATCGCCAGGTTCCAGAAAAAGGACAGCGATACTGATTCGGTGAAGATTTGGAGCGTTGCCGAAGACGAAAGCGCGAAAACGAGGGAAGCAGTAGAAGAGAAAACAACGTCCACGAAGAAGAGGAAGCGCAAGGGAAACTCTTCCGAAACTGTTGAAGGATTCAACGTGTTTAGAAATTCCGCATCTGTGGTGCAGTCCAGTGGTGAAGTTCAAGCTGATGAGGAGTCTATTGAGCTGAATAAAAAGAAGAATAAGAAGGAAAAAAATCGTCAACTCGAGCGGGACGTGATATTCAGAAAGCAGCACAACATTCATGTCTCTGGTTATAATGTACCGTCTCCTCTTCAAAGCTTTGACGAGTTGAAAACAAGATATAACTGTCCATCGTATTTGTTGCGCAATCTGAAGGAGCTTGGATTCAAACTTCCAACGCCTATTCAAAGACAGGCTATTCCAGTACTTTTAGATGGTCGTGAATGCTTTGCGTGTGCACCAACTGGTTCTGGGAAAACCCTTGCATTTGTATGTCCAATGTTAATGAAGCTTAAGGACCCAGAAAGAGGTGGCATTCGAGCTGTCATCCTTTGTCATACCCGTGAATTGTCTGCTCAGATATTTCGAGAGTGCAAAAAGCTTGCCAAAAGAAAAAAATTTCGTATTAAGTTAATGACTAAAAATCTCTTAAGAAATGCTGATTTTTCAAAGTTTCCATGTGATATACTAATATCTACACCACTCCGATTACGCTTGGCTATCAAGAAGAAGAAGATTGATCTCAGCAGAGTTGATTATCTTGTCCTTGATGAATCGGATAAGCTTTTTGAGCCTGAATTATTTAAACAGATTGATTCTGTTCTCAAGGCATGCTCCAACCCATCAATCATACGCTCACTTTTCAGTGCTACTTTACCTGATTTTGTTGAGGATCGAGCTCGAGAACTTATGCATGATGCTGTTCGTGTAATTGTTGGCAGGAAGAATATGGCTTCTGAAACGATAAAGCAAAAATTGGTTTTTACTGGAAGTGAAGAAGGAAAACTTCTTGCAATTCGTCAAAGTTTTGCAGAGAGTCTAAATCCTCCAGTATTGGTTTTTCTCCAAAGCAAGGAACGAGCCAAGGAGCTGTACGGCGAACTTGCATTTGACAACATTAGAGTTGATGTCATTCATTCTGATTTGTCTCAACAAGAGCGAGAAAATGCTGTTGATAACTTCAGAGCTGGAAAAACATGGGTTTTGATTGCTACTGATGTGGTTGCCCGGGGCATGGATTTCAAAGGTGTGAACTGTGTGATCAATTATGATTTCCCTGATTCTGCCTCCGCATATGTCCACAGAATTGGTCGTTCTGGCAGAGCAGGGAGGACTGGAGAAGCTATTACTTTTTACACAGAGGATGACATTCCATTCCTGCGGAATGTTGCTAATCTTATGGCAGCATCGGGCTGTGAAGTTCCATCCTGGCTCATGGAGTTGCAGAAAAAGAAGTGGAAGAAGCACCGGCCCAAAAGAGATTCAATCTCCACAAAACCAGAAACAGCATAG 1611 0.4227 MASDSSFLFSGIRFDRKKFGADIARFQKKDSDTDSVKIWSVAEDESAKTREAVEEKTTSTKKRKRKGNSSETVEGFNVFRNSASVVQSSGEVQADEESIELNKKKNKKEKNRQLERDVIFRKQHNIHVSGYNVPSPLQSFDELKTRYNCPSYLLRNLKELGFKLPTPIQRQAIPVLLDGRECFACAPTGSGKTLAFVCPMLMKLKDPERGGIRAVILCHTRELSAQIFRECKKLAKRKKFRIKLMTKNLLRNADFSKFPCDILISTPLRLRLAIKKKKIDLSRVDYLVLDESDKLFEPELFKQIDSVLKACSNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRKNMASETIKQKLVFTGSEEGKLLAIRQSFAESLNPPVLVFLQSKERAKELYGELAFDNIRVDVIHSDLSQQERENAVDNFRAGKTWVLIATDVVARGMDFKGVNCVINYDFPDSASAYVHRIGRSGRAGRTGEAITFYTEDDIPFLRNVANLMAASGCEVPSWLMELQKKKWKKHRPKRDSISTKPETA* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g01230 536 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 488 IPR027417 -
Phac2g01230 536 Gene3D - 83 342 IPR027417 -
Phac2g01230 536 MobiDBLite consensus disorder prediction 87 112 - -
Phac2g01230 536 SMART helicmild6 395 476 IPR001650 -
Phac2g01230 536 Gene3D - 343 520 IPR027417 -
Phac2g01230 536 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 61 522 - -
Phac2g01230 536 SMART ultradead3 161 358 IPR014001 -
Phac2g01230 536 MobiDBLite consensus disorder prediction 45 73 - -
Phac2g01230 536 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 142 170 IPR014014 GO:0003724
Phac2g01230 536 Pfam DEAD/DEAH box helicase 166 330 IPR011545 GO:0003676|GO:0005524
Phac2g01230 536 Pfam Helicase conserved C-terminal domain 373 476 IPR001650 -
Phac2g01230 536 CDD SF2_C_DEAD 355 485 - -
Phac2g01230 536 CDD DEADc_DDX52 153 346 IPR044764 GO:0003724|GO:0005524|GO:0030490
Phac2g01230 536 MobiDBLite consensus disorder prediction 45 70 - -
Phac2g01230 536 MobiDBLite consensus disorder prediction 96 112 - -
Phac2g01230 536 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 173 343 IPR014001 -
Phac2g01230 536 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 354 515 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g01230 Phac-Chr2 8915437 8921168 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g01230 136 514 Eukaryotic Initiation Factors Gene Family AT3G19760 30.971 1.02e-53 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g01230 K14779 - gmx:100800969 939.102