Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Phac2g01227 | ATGGCCAGCGACTCGTCGTTTTTGTTTTCCGGCATTCGTTTCGACAGAAAGAAGTTTGGCGCCGATATCGCCAGGTTCCAGAAAAAGGACAGCGATACTGATTCGGTGAAGATTTGGAGCGTTGCCGAAGACGAAAGCGCGAAAACGAGGGAAGCAGTAGAAGAGAAAACAACGTCCACGAAGAAGAGGAAGCGCAAGGGAAACTCTTCCGAAACTGTTGAAGGATTCAACGTGTTTAGAAATTCCGCATCTGTGGTGCAGTCCAGTGGTGAAGTTCAAGCTGATGAGGAGTCTATTGAGCTGAATAAAAAGAAGAATAAGAAGGAAAAAAATCGTCAACTCGAGCGGGACGTGATATTCAGAAAGCAGCACAACATTCATGTCTCTGGTTATAATGTACCGTCTCCTCTTCAAAGCTTTGACGAGTTGAAAACAAGATATAACTGTCCATCGTATTTGTTGCGCAATCTGAAGGAGCTTGGATTCAAACTTCCAACGCCTATTCAAAGACAGGCTATTCCAGTACTTTTAGATGGTCGTGAATGCTTTGCGTGTGCACCAACTGGTTCTGGGAAAACCCTTGCATTTGTATGTCCAATGTTAATGAAGCTTAAGGACCCAGAAAGAGGTGGCATTCGAGCTGTCATCCTTTGTCATACCCGTGAATTGTCTGCTCAGATATTTCGAGAGTGCAAAAAGCTTGCCAAAAGAAAAAAATTTCGTATTAAGTTAATGACTAAAAATCTCTTAAGAAATGCTGATTTTTCAAAGTTTCCATGTGATATACTAATATCTACACCACTCCGATTACGCTTGGCTATCAAGAAGAAGAAGATTGATCTCAGCAGTGCTACTTTACCTGATTTTGTTGAGGATCGAGCTCGAGAACTTATGCATGATGCTGTTCGTGTAATTGTTGGCAGGAAGAATATGGCTTCTGAAACGATAAAGCAAAAATTGGTTTTTACTGGAAGTGAAGAAGGAAAACTTCTTGCAATTCGTCAAAGTTTTGCAGAGAGTCTAAATCCTCCAGTATTGGTTTTTCTCCAAAGCAAGGAACGAGCCAAGGAGCTGTACGGCGAACTTGCATTTGACAACATTAGAGTTGATGTCATTCATTCTGATTTGTCTCAACAAGAGCGAGAAAATGCTGTTGATAACTTCAGAGCTGGAAAAACATGGGTTTTGATTGCTACTGATGTGGTTGCCCGGGGCATGGATTTCAAAGGTGTGAACTGTGTGATCAATTATGATTTCCCTGATTCTGCCTCCGCATATGTCCACAGAATTGGTCGTTCTGGCAGAGCAGGGAGGACTGGAGAAGCTATTACTTTTTACACAGAGGATGACATTCCATTCCTGCGGAATGTTGCTAATCTTATGGCAGCATCGGGCTGTGAAGTTCCATCCTGGCTCATGGAGTTGCAGAAAAAGAAGTGGAAGAAGCACCGGCCCAAAAGAGATTCAATCTCCACAAAACCAGAAACAGCATAG | 1494 | 0.4264 | MASDSSFLFSGIRFDRKKFGADIARFQKKDSDTDSVKIWSVAEDESAKTREAVEEKTTSTKKRKRKGNSSETVEGFNVFRNSASVVQSSGEVQADEESIELNKKKNKKEKNRQLERDVIFRKQHNIHVSGYNVPSPLQSFDELKTRYNCPSYLLRNLKELGFKLPTPIQRQAIPVLLDGRECFACAPTGSGKTLAFVCPMLMKLKDPERGGIRAVILCHTRELSAQIFRECKKLAKRKKFRIKLMTKNLLRNADFSKFPCDILISTPLRLRLAIKKKKIDLSSATLPDFVEDRARELMHDAVRVIVGRKNMASETIKQKLVFTGSEEGKLLAIRQSFAESLNPPVLVFLQSKERAKELYGELAFDNIRVDVIHSDLSQQERENAVDNFRAGKTWVLIATDVVARGMDFKGVNCVINYDFPDSASAYVHRIGRSGRAGRTGEAITFYTEDDIPFLRNVANLMAASGCEVPSWLMELQKKKWKKHRPKRDSISTKPETA* | 498 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Phac2g01227 | 497 | CDD | SF2_C_DEAD | 316 | 446 | - | - | |
Phac2g01227 | 497 | SMART | helicmild6 | 356 | 437 | IPR001650 | - | |
Phac2g01227 | 497 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 179 | 477 | IPR027417 | - | |
Phac2g01227 | 497 | MobiDBLite | consensus disorder prediction | 87 | 112 | - | - | |
Phac2g01227 | 497 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 173 | 344 | IPR014001 | - | |
Phac2g01227 | 497 | MobiDBLite | consensus disorder prediction | 45 | 73 | - | - | |
Phac2g01227 | 497 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 142 | 170 | IPR014014 | GO:0003724 | |
Phac2g01227 | 497 | Pfam | Helicase conserved C-terminal domain | 334 | 437 | IPR001650 | - | |
Phac2g01227 | 497 | CDD | DEADc_DDX52 | 153 | 307 | IPR044764 | GO:0003724|GO:0005524|GO:0030490 | |
Phac2g01227 | 497 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 315 | 476 | IPR001650 | - | |
Phac2g01227 | 497 | Pfam | DEAD/DEAH box helicase | 166 | 290 | IPR011545 | GO:0003676|GO:0005524 | |
Phac2g01227 | 497 | Gene3D | - | 99 | 303 | IPR027417 | - | |
Phac2g01227 | 497 | SMART | ultradead3 | 161 | 319 | IPR014001 | - | |
Phac2g01227 | 497 | MobiDBLite | consensus disorder prediction | 45 | 70 | - | - | |
Phac2g01227 | 497 | MobiDBLite | consensus disorder prediction | 96 | 112 | - | - | |
Phac2g01227 | 497 | PANTHER | RNA HELICASE | 281 | 460 | - | - | |
Phac2g01227 | 497 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 120 | 307 | IPR027417 | - | |
Phac2g01227 | 497 | Gene3D | - | 304 | 481 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Phac2g01227 | Phac-Chr2 | 8915437 | 8921168 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Phac2g01227 | 136 | 475 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 29.396 | 9.47e-45 | 160 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Phac2g01227 | K14779 | - | gmx:100800969 | 847.04 |