Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g01227 ATGGCCAGCGACTCGTCGTTTTTGTTTTCCGGCATTCGTTTCGACAGAAAGAAGTTTGGCGCCGATATCGCCAGGTTCCAGAAAAAGGACAGCGATACTGATTCGGTGAAGATTTGGAGCGTTGCCGAAGACGAAAGCGCGAAAACGAGGGAAGCAGTAGAAGAGAAAACAACGTCCACGAAGAAGAGGAAGCGCAAGGGAAACTCTTCCGAAACTGTTGAAGGATTCAACGTGTTTAGAAATTCCGCATCTGTGGTGCAGTCCAGTGGTGAAGTTCAAGCTGATGAGGAGTCTATTGAGCTGAATAAAAAGAAGAATAAGAAGGAAAAAAATCGTCAACTCGAGCGGGACGTGATATTCAGAAAGCAGCACAACATTCATGTCTCTGGTTATAATGTACCGTCTCCTCTTCAAAGCTTTGACGAGTTGAAAACAAGATATAACTGTCCATCGTATTTGTTGCGCAATCTGAAGGAGCTTGGATTCAAACTTCCAACGCCTATTCAAAGACAGGCTATTCCAGTACTTTTAGATGGTCGTGAATGCTTTGCGTGTGCACCAACTGGTTCTGGGAAAACCCTTGCATTTGTATGTCCAATGTTAATGAAGCTTAAGGACCCAGAAAGAGGTGGCATTCGAGCTGTCATCCTTTGTCATACCCGTGAATTGTCTGCTCAGATATTTCGAGAGTGCAAAAAGCTTGCCAAAAGAAAAAAATTTCGTATTAAGTTAATGACTAAAAATCTCTTAAGAAATGCTGATTTTTCAAAGTTTCCATGTGATATACTAATATCTACACCACTCCGATTACGCTTGGCTATCAAGAAGAAGAAGATTGATCTCAGCAGTGCTACTTTACCTGATTTTGTTGAGGATCGAGCTCGAGAACTTATGCATGATGCTGTTCGTGTAATTGTTGGCAGGAAGAATATGGCTTCTGAAACGATAAAGCAAAAATTGGTTTTTACTGGAAGTGAAGAAGGAAAACTTCTTGCAATTCGTCAAAGTTTTGCAGAGAGTCTAAATCCTCCAGTATTGGTTTTTCTCCAAAGCAAGGAACGAGCCAAGGAGCTGTACGGCGAACTTGCATTTGACAACATTAGAGTTGATGTCATTCATTCTGATTTGTCTCAACAAGAGCGAGAAAATGCTGTTGATAACTTCAGAGCTGGAAAAACATGGGTTTTGATTGCTACTGATGTGGTTGCCCGGGGCATGGATTTCAAAGGTGTGAACTGTGTGATCAATTATGATTTCCCTGATTCTGCCTCCGCATATGTCCACAGAATTGGTCGTTCTGGCAGAGCAGGGAGGACTGGAGAAGCTATTACTTTTTACACAGAGGATGACATTCCATTCCTGCGGAATGTTGCTAATCTTATGGCAGCATCGGGCTGTGAAGTTCCATCCTGGCTCATGGAGTTGCAGAAAAAGAAGTGGAAGAAGCACCGGCCCAAAAGAGATTCAATCTCCACAAAACCAGAAACAGCATAG 1494 0.4264 MASDSSFLFSGIRFDRKKFGADIARFQKKDSDTDSVKIWSVAEDESAKTREAVEEKTTSTKKRKRKGNSSETVEGFNVFRNSASVVQSSGEVQADEESIELNKKKNKKEKNRQLERDVIFRKQHNIHVSGYNVPSPLQSFDELKTRYNCPSYLLRNLKELGFKLPTPIQRQAIPVLLDGRECFACAPTGSGKTLAFVCPMLMKLKDPERGGIRAVILCHTRELSAQIFRECKKLAKRKKFRIKLMTKNLLRNADFSKFPCDILISTPLRLRLAIKKKKIDLSSATLPDFVEDRARELMHDAVRVIVGRKNMASETIKQKLVFTGSEEGKLLAIRQSFAESLNPPVLVFLQSKERAKELYGELAFDNIRVDVIHSDLSQQERENAVDNFRAGKTWVLIATDVVARGMDFKGVNCVINYDFPDSASAYVHRIGRSGRAGRTGEAITFYTEDDIPFLRNVANLMAASGCEVPSWLMELQKKKWKKHRPKRDSISTKPETA* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g01227 497 CDD SF2_C_DEAD 316 446 - -
Phac2g01227 497 SMART helicmild6 356 437 IPR001650 -
Phac2g01227 497 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 477 IPR027417 -
Phac2g01227 497 MobiDBLite consensus disorder prediction 87 112 - -
Phac2g01227 497 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 173 344 IPR014001 -
Phac2g01227 497 MobiDBLite consensus disorder prediction 45 73 - -
Phac2g01227 497 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 142 170 IPR014014 GO:0003724
Phac2g01227 497 Pfam Helicase conserved C-terminal domain 334 437 IPR001650 -
Phac2g01227 497 CDD DEADc_DDX52 153 307 IPR044764 GO:0003724|GO:0005524|GO:0030490
Phac2g01227 497 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 315 476 IPR001650 -
Phac2g01227 497 Pfam DEAD/DEAH box helicase 166 290 IPR011545 GO:0003676|GO:0005524
Phac2g01227 497 Gene3D - 99 303 IPR027417 -
Phac2g01227 497 SMART ultradead3 161 319 IPR014001 -
Phac2g01227 497 MobiDBLite consensus disorder prediction 45 70 - -
Phac2g01227 497 MobiDBLite consensus disorder prediction 96 112 - -
Phac2g01227 497 PANTHER RNA HELICASE 281 460 - -
Phac2g01227 497 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 120 307 IPR027417 -
Phac2g01227 497 Gene3D - 304 481 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g01227 Phac-Chr2 8915437 8921168 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g01227 136 475 Eukaryotic Initiation Factors Gene Family AT3G19760 29.396 9.47e-45 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g01227 K14779 - gmx:100800969 847.04