Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g01211 ATGGATCCGGCAGCGATCATCAACGCCGCCGCCGCCAACACAACGTCCTACAACCTCTCAGAGATCTGGCACTTCCCGCCTCCCAACGTTCCAGACGCCACTGCCGCGCTGGGCCTCAGTAGGGCTCATTTCGGACACGGGCTTCCGGACTTCGGCCCTGCCCCGGCCCGAGACAGCGGCCCGGCTAGCATTGGCCCGAAGAAGAGGCGCGACGCCGAGCAGGAGGAATCGGCTAAGGGCGTCTTCACTAGCAATGGCGTGAAGGAGGGTGGTGGTGGAGGTGATGGGAAACGGGTTAAGACAACAGGGAACCACAAGAGTGAGAGTGCCATAGGTGAAGGAGAAAGCAGTTCAGGAAAGCTTGCGGAGCAAGGTGGAAAGCCACCTTCAGAGCCTCCTTCTAAGCAAGACTACATTCATGTCCGAGCCAGAAGGGGTCAAGCTACTGATAGCCACAGTCTTGCAGAAAGGGCTAGACGGGAAAAGATTAGTGAGAGGATGAAAATTCTTCAGGATTTGGTCCCGGGTTGTAATAAGGTTATTGGGAAAGCGTTGGTCCTTGATGAGATAATTAATTATATCCAATCGCTTCAGCGGCAAGTAGAGTTTTTGTCAATGAAGCTTGAGGCCGTAAATTCAAGAATGCCCTCCGGAATTGAAGTGTTTCCTCCTAAAGATTTTGATCAGCAAACATTTGATACAACTGGCATCCCATTCGCTTCTCAACCTACAAGAGAGTATAGCCGAGGTTCATCACCAGAGTGGTTACATATGCAGGTGGGAAGTGGTTTTGAAAGAGCAACATAG 807 0.5204 MDPAAIINAAAANTTSYNLSEIWHFPPPNVPDATAALGLSRAHFGHGLPDFGPAPARDSGPASIGPKKRRDAEQEESAKGVFTSNGVKEGGGGGDGKRVKTTGNHKSESAIGEGESSSGKLAEQGGKPPSEPPSKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMPSGIEVFPPKDFDQQTFDTTGIPFASQPTREYSRGSSPEWLHMQVGSGFERAT* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g01211 268 SMART finulus 153 203 IPR011598 GO:0046983
Phac2g01211 268 CDD bHLH_AtBPE_like 137 222 - -
Phac2g01211 268 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 145 215 IPR036638 GO:0046983
Phac2g01211 268 MobiDBLite consensus disorder prediction 48 136 - -
Phac2g01211 268 MobiDBLite consensus disorder prediction 63 77 - -
Phac2g01211 268 Coils Coil 194 214 - -
Phac2g01211 268 FunFam Basic helix-loop-helix transcription factor 144 217 - -
Phac2g01211 268 Gene3D - 144 218 IPR036638 GO:0046983
Phac2g01211 268 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 147 197 IPR011598 GO:0046983
Phac2g01211 268 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 69 238 IPR024097 GO:0006355
Phac2g01211 268 Pfam Helix-loop-helix DNA-binding domain 151 198 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g01211 Phac-Chr2 8757220 8760204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g01211 1 226 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 55.417 6.57e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac2g01211 HLH 2.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g01211 - - gmx:100794893 390.578