Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g01196 ATGTTGAAGACGAAAGCATTCCAAGGCGCCGACGTGTTCATGTCGCGAAACCTCGTGCCGCCGGAAGTCTTCGACGCGCTGCACGATGCGGTTAAAGATAACGGCGCTCAGCTCCACCTCTGCTGCGACCCCTCCCGTAACGGTCTCAACGATTACCACATCATTGCTTCCAGAAAACACGAAAAGTTCGATGATCTCAAATCCAAGGGCTGCAAGTTGCTCGGTCCTAGATGTGTTCTTTCGTGTGCCAAAGGTGGAAGGTCTCTGCCTAAACAAGGCTTCACCTGTTGCCTTGCCATGGACGGGGTCAAAATACTTGCATCTGGCTTTGATACGGAAGAGAAGGTTAAGATAGAAGAGTTAGTGGCTGAAATGGGGGGAGTGCTACACACTAAGACATCGTTGGATTTGAACTTTGTCATTGTGAAAAATGTTTTAGCTGCAAAGTACAAGTGGGCTTTGAATGAATTGGAGAAACCAATAGTCACGTATGAATGGTTAAAACAATGCTCGGAGGAGCATCGTGTTGTTCCTCAAGAGTCATACAAGGTCCTTCCTTTCTCTGGGTTAAAGATTTGTGTTACTGGAATTCCGGGAGATGTTCGTAAAGAGATGGAGAAGCTTATTTTACAAAATGGTGGAAAATACTCCGCGGAATTGACAAAGAATTGCACACATTTGATTTCTGAGGCTCCTGAAGGTGACAAGTATAAGGTAGCAAAACGATGGGGCCACATTCATATTGTGATAAGTAAATGGTTTGATCAATCAATTGCTCGAAGAGCATGTCTGAATGAGGAGTTCTTCCCTGTTCAGCATGGATCTGTATCTTCACATAAAGTAACCAGGGACTTAACAATGCAACACAGCCAAGAAAAGGATATTGGGAAATTGCAATCTGCGGCATGCTCAGGTGCTACAGATTCAAATGTGCAAGTTTCTTGTGCTGAGTTTATGGAAAGTGATCAAGAAGCTATGCCATCAGAATATATGTCCTCGGTTTCACAAACTCGTAGATTTGCTAAGGAGGCAGATGTTGAACCTCCATTGCAGGCCAGTGGTAACTTTGACGGTGTTGTTGCTGATGATTCTGAATCTGATGATAAAGATTTGTACTTATCAGAGTGCAGAATATTTCTAGTTGGTTTTGAAGCTCTAGAAATGCGGAAACTAATTAATATTGTGCGTAAAGGTGGAGGCTCCCGGTATATGTCTTTTAATGACAAATTGACACACATAGTAGTTGGGAATCCTACTGAAATGGAAAAGAAGGATGTGAGGAGTCTTGCTGCTTTAGGTGTAATTTATGTTGTTAAAACCACATGGCTTGAAGATTGCGACCATAAAAAGATAGAAGTCCCTGTTCTTAGGAGACACATTGCATATGATCTACTTCATCCAAAAGCAAGCTTGGTAAAAGGAACCGTAACAGGAAGCACATCTATGGATCACAGTAAAAGCTCCAGTTGTCATCAAAGCTCACATCAGGTGGACTTCAAAATTGTGCAGCCAGAATCTTTGGAGAAAAGAAAAGAAGAGATACAAGATATGGATATAAATGGTCTCTCATTCCGTAAAGCAAATTGTAGAACTATGTTGCAAAATGAACTTCCTGATAGTAAATTGAGCACACAAAGAATGAGCCAGCCTGACTTCAGTGTTCCATACGAAAAATCTGCAAATGTTTTCAGAGGGAAGCTGTTTTGTTTCTCAAATTTGTTTCCTGAAGAAAAGAGAGGTGAGATTGTTCAATGGATAAGTCAAGGTGGAGGAGTGGTAATAAGTGGGAAAACAAAACAGATTGTCCACTACACAGTTGAGTGTCATGGTGTAACACCCATGTTGACTGGTGATTCCACGAGTTTGTACATTTCCAGTCATTGGATACGATCTTGTTTGGAGGCTGGATCCTTGCTGGATGTTGACACTCACATTCTTTATTCTCCACTTCCCTGCCACGTTCCCTTGCCTGGATTTGAAAGATTCCGGTTTTGTGTTTCACAGTATGAGGAGAAAGACAGGAATCTGCTAAGAAACTTGTGTTTTGTTCTAGGAGCTAAATTTGGGGAGAAGTTGACTAAGAAGGTTACGCATTTGTTGTGTAAATTCACCAATGGACCCAAGTATGATGGTGCTCTTAAATGGGGGATTCAATCAGTTACATCTGAATGGATATTTGAATGCATCAAACAGAATGGAGTTGTTGCCACTGATCGATTTTTACCAAAAGAAGTAACAGCTCAAGATCGAGAGGCAGGAATTTGCACTGGGAGTCAATTTCCTACCCAGGCTGCTCAAATGATAAGTGACATGCCCTCGCAGTTGTCAAGTCAATCACAAATTTTGAGAGGCATCACAAATAAAAATGTGGGTCGTGGAGTTGATAATCATGAGGCCAATTTCAAGAAACCAAGTGTTTATAGCAAAAAGGCAAGACTTGTGGAAGAACCTTGCATGTCTAATACAATGACTTCGGCATCAAATTCAGGTATTCATGCCTATGAAAATATTTTTTCTGAAGACAATATGATAATTGATGCTGGGGAGGTGTGCCTTACTGTTCCTGATGTTGCTGCTGCAATTGAGGACTTGTTAGAGCAGACTAGTAAGGTACAACAGCTGCTTTTTTTTGTTATGTTGATATTTCATTAA 2652 0.414 MLKTKAFQGADVFMSRNLVPPEVFDALHDAVKDNGAQLHLCCDPSRNGLNDYHIIASRKHEKFDDLKSKGCKLLGPRCVLSCAKGGRSLPKQGFTCCLAMDGVKILASGFDTEEKVKIEELVAEMGGVLHTKTSLDLNFVIVKNVLAAKYKWALNELEKPIVTYEWLKQCSEEHRVVPQESYKVLPFSGLKICVTGIPGDVRKEMEKLILQNGGKYSAELTKNCTHLISEAPEGDKYKVAKRWGHIHIVISKWFDQSIARRACLNEEFFPVQHGSVSSHKVTRDLTMQHSQEKDIGKLQSAACSGATDSNVQVSCAEFMESDQEAMPSEYMSSVSQTRRFAKEADVEPPLQASGNFDGVVADDSESDDKDLYLSECRIFLVGFEALEMRKLINIVRKGGGSRYMSFNDKLTHIVVGNPTEMEKKDVRSLAALGVIYVVKTTWLEDCDHKKIEVPVLRRHIAYDLLHPKASLVKGTVTGSTSMDHSKSSSCHQSSHQVDFKIVQPESLEKRKEEIQDMDINGLSFRKANCRTMLQNELPDSKLSTQRMSQPDFSVPYEKSANVFRGKLFCFSNLFPEEKRGEIVQWISQGGGVVISGKTKQIVHYTVECHGVTPMLTGDSTSLYISSHWIRSCLEAGSLLDVDTHILYSPLPCHVPLPGFERFRFCVSQYEEKDRNLLRNLCFVLGAKFGEKLTKKVTHLLCKFTNGPKYDGALKWGIQSVTSEWIFECIKQNGVVATDRFLPKEVTAQDREAGICTGSQFPTQAAQMISDMPSQLSSQSQILRGITNKNVGRGVDNHEANFKKPSVYSKKARLVEEPCMSNTMTSASNSGIHAYENIFSEDNMIIDAGEVCLTVPDVAAAIEDLLEQTSKVQQLLFFVMLIFH* 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g01196 883 ProSiteProfiles BRCT domain profile. 368 446 IPR001357 -
Phac2g01196 883 Pfam twin BRCT domain 663 724 IPR001357 -
Phac2g01196 883 Pfam twin BRCT domain 190 253 IPR001357 -
Phac2g01196 883 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 9 780 - -
Phac2g01196 883 SUPERFAMILY BRCT domain 561 648 IPR036420 -
Phac2g01196 883 ProSiteProfiles BRCT domain profile. 182 271 IPR001357 -
Phac2g01196 883 Gene3D BRCT domain 37 94 IPR036420 -
Phac2g01196 883 Gene3D BRCT domain 555 652 IPR036420 -
Phac2g01196 883 SUPERFAMILY BRCT domain 365 452 IPR036420 -
Phac2g01196 883 Pfam BRCA1 C Terminus (BRCT) domain 100 170 IPR001357 -
Phac2g01196 883 Pfam BRCA1 C Terminus (BRCT) domain 370 446 IPR001357 -
Phac2g01196 883 CDD BRCT 103 170 - -
Phac2g01196 883 SMART BRCT_7 560 636 IPR001357 -
Phac2g01196 883 SMART BRCT_7 656 732 IPR001357 -
Phac2g01196 883 SMART BRCT_7 97 174 IPR001357 -
Phac2g01196 883 SMART BRCT_7 370 450 IPR001357 -
Phac2g01196 883 SMART BRCT_7 184 261 IPR001357 -
Phac2g01196 883 ProSiteProfiles BRCT domain profile. 100 184 IPR001357 -
Phac2g01196 883 CDD BRCT_TopBP1_rpt2_like 186 261 - -
Phac2g01196 883 Gene3D BRCT domain 186 272 IPR036420 -
Phac2g01196 883 FunFam Transcription coactivator 556 652 - -
Phac2g01196 883 Gene3D BRCT domain 97 185 IPR036420 -
Phac2g01196 883 SUPERFAMILY BRCT domain 58 183 IPR036420 -
Phac2g01196 883 FunFam Transcription coactivator 97 186 - -
Phac2g01196 883 ProSiteProfiles BRCT domain profile. 659 742 IPR001357 -
Phac2g01196 883 Gene3D BRCT domain 653 747 IPR036420 -
Phac2g01196 883 FunFam DNA topoisomerase II binding protein 1 187 279 - -
Phac2g01196 883 CDD BRCT_TopBP1_rpt2_like 657 732 - -
Phac2g01196 883 ProSiteProfiles BRCT domain profile. 558 646 IPR001357 -
Phac2g01196 883 SUPERFAMILY BRCT domain 186 271 IPR036420 -
Phac2g01196 883 FunFam Transcription coactivator 351 460 - -
Phac2g01196 883 Pfam BRCT domain, a BRCA1 C-terminus domain 560 643 IPR001357 -
Phac2g01196 883 Gene3D BRCT domain 359 456 IPR036420 -
Phac2g01196 883 SUPERFAMILY BRCT domain 625 743 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g01196 Phac-Chr2 8586442 8605787 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g01196 1 872 Core DNA Replication Machinery Family AT1G77320 49.835 0.0 811
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g01196 K10728 - gmx:100804966 1454.5