Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g01182 ATGAAGAGGTCTAGAGATGAAGTTTTCACGAGTTGTTCTCAACTCAAACGGCCTGTGGTGTCTGCTCGAGGAGAAGCGTCTGGGCAACAGCAGATGGCAAATGGAGGTGCTCAGAAATTGACAACTAATGATGCCCTAGCATATCTTAAAGCAGTAAAGGATATATTTCAAGATAAGAGGGACAAGTATGATGACTTTTTGGAGGTTATGAAAGATTTCAAGGCTCAAAGAATTGATACCGCGGGTGTCATTGCAAGAGTGAAGGAACTGTTTAAAGGCCATAGAGATCTTATATTAGGATTTAACACCTTCTTGCCTAAGGGGTATGAAATCACACTTCCATCAGAGGATGAACAACCTGCTCCAAAGAAACCTGTTGAATTTGAAGAAGCTATAAATTTTGTGAACAAGATAAAGACTCGTTTTCAAGGCGATGATCATGTGTACAAATCATTTCTTGACATATTGAACATGTACAGAAAGGAAAACAAGTCTATTACCGAGGTCTACCAGGAGGTTGCTGCTATTTTCCAGGACCACCCTGATCTTCTTGACGAGTTTACTCATTTTCTTCCAGACGCTTCTGCAGCTGCCTCTACTCATTATGCTTCTGCTCGTAATTCTATTCTTCGTGATAGGAGCTCAATTCCAACAGTACGCCCAATGCATGTTGAAAAGCGAGAAAGGACCATGGTTTCACATGGGGATCATGACCCCAGTGGTGATCGTCCTGACCTAGATCACGACAGAGGTTTGTTAAGGATAGAAAAGGAGAGGAGACGTGTGGAGAAGGAAAAGGAACGCAGAGAAGATAGAGACAAGAGAGAACGGGAAAAGGATGATAGAGATTATGAGCATGATAGGGAGCGATTTCCTCACAAACGGAATCGTAAGGTTGAAGACTCTGGAGCTGAACCATTGCTTGATGCAGATGAAAATTTTGTTATGCGTCCTATGTCATCCACTTGTGATGATAAAAATTCTCTGAAAAGTATGTACAGTCAAGAGTTAGCTTTCTGCGAAAAAGTCAAAGAAAAATTACGAAATCCTGATGACTACCAGGAATTTTTGAAGTGCTTACATATTTACAGCAGGGAAATAATTACCCGACAAGAGTTGCAGTCATTGGTGGGCGATTTACTGGGAAAGTATCCAGATCTTATGGAGGGCTTTAATGAATTTTTGCTACAATCTGAAAAAAATGATGGTGGATTCCTTGCTGGTGTTATGAATAAAAAGTCCTTATGGAATGATGGACATGGACTGAAACAAATGAAGGGTGAAGACAGGGAAAGAGAACGGGATCGAGATAGAGACCGATATAGGGATGACGGGATGAAAGAAAGGGACCGTGAGTTCCGTGAACGGGATAAATCTACTGTGATTGCCAACAAGGATGTTTTAGGTTCTAAGATGTCTCTATATCCCAGCAAGGATAAGTATTTATCAAAACCTATAAATGAGCTGGACCTTTCTAACTGCGACCAGTGTACTCCTAGTTACCGGCTCTTACCAAAAAATTACCCAATACCTATAGCTAGCCAGAAAACAGAACTTGGTGCTGAAGTGTTGAATGATCACTGGGTGTCTGTCACTTCAGGAAGTGAGGATTACTCCTTCAAACATATGCGCAAAAATCAGTATGAAGAGAGCTTGTTTAGATGCGAAGATGACAGGTTTGAACTTGACATGTTGTTAGAGTCTGTGAATGTAACAACCAAACGGGTAGAAGAGCTGTTAGACAAGATCAATAATAATACAATTAAAGGAGATATCCCAATTCGTATTGAGGAGCACTTAACAGCTATAAATCTTAGGTGTATCGAAAGATTATATGGTGATCATGGGCTTGATGTGATGGAAGTGTTAAGGAAAAATGCACCTCTAGCTTTGCCAGTGATATTAACACGCTTGAAGCAGAAACAGGAAGAATGGGCAAGGTGCCGTGCTGATTTTAGTAAAGTTTGGGCTGAAATATATGCGAAGAACTATCACAAATCTCTTGATCATCGTAGCTTCTACTTTAAGCAGCAGGATACGAAAAGCCTGAGCACCAAAGCCTTGCTGGCAGAAATCAAAGAAATCAGTGAAAAGAAACGCAAAGAAGATGATGTTCTTCTTGCTATTGCTGCTGGAAACAGATGGCCAATTCTACCAAACTTGGAGTTTAAGTATTCTGATCTAGATATTCATGAAGATTTGTATCAACTCATAAAATATTCCTGTGGTGAAATTTGCACAACCGAACACGTGGATAAAGTTATGAAGGTTTGGACAACATTTTTAGAGCCCATGCTTTGTGTTCCTTCTCGGCCCCAGGGTGCAGAGGATACAGAAGATGTTATCAAGACTAAGAATAGTAATGTCAAGAATGGCACTGCAAGTGTTGCTGAAAGTGATGGTAGCCCTATTGTGGGTGCTACCATCATGAATCCAAAGCATATAAATGTTTCCAGAAATGGGGATGGTTGTATGCCAGAGCCAGTAGACCAATCAACTTCTAGTAAAGCATGGCAATCAAATGGTGATAGTGGTGTTAGAGAGGATAGGTATCTTGATGACCGTGCAATGCGTAAAACTGAAACTTTGGGAAGTAATTCACAGCATGGTAAAATGAATAATATTGCTTTCCCACCTAATGAACTATCAGGATTTAATAATAAGCAAGACCAGTCCAGTGAAAGGTTAGTGAATGCAAATGTCTCACCCGCATCTGGAATGGAGCAAAGCAATGGGAGAACAAACATAGATAATTTGTCAGGACTAACTGCCACTCCAACTAGACCTGTTAATGCTTCTGCTGGGGGAGGACCTGATATACCACCTTTAGAGGGTGGTGATTCTGCAAGACCGGGTACATCCTCAAATGGGGCCATCACTGGAGGAACCAAAGTCCACCGATATCAAGAGGAATCAGTTCGGCCCTTCAAAAGTGAAAGAGAAGAGGGTGAGTTATCTCCTAATGGAGACATTGAAGAAGATAACTTTGAAGTTTATGGAGGTAATGGTTTGGATGCAGTGCATAAAGAAAAGGATGGTGGTATGAGTCGGCAATATCAAGATCGACATGGGGATGATGTTTGTGGTGAAACCAGAGGAGAAAACGATGTTGATGCTGATGATGAAGGTGAAGAAAGTCCTCACAGGTCATCAGAGGACAGTGAAAATGCATCTGAAAATGTCGATGTTTCTGGAAGCGAGTCTGCTGATGGTGAGGAGTGTTCTCGAGAAGAGCATGAGGATGGGGAACATGATCACAAGGCTGAGAGTGAAGGTGAAGCTGAAGGAATAGCTGATGCTCATGACGTTGAAGGAGATGGAATGTCATTGCCATATTCTGAACGCTTTCTCCTAACTGTGAATCCACTAGCAAAGTATGTTCCTCCAATGTTACATGAGAAGGACAGGAATTCAAGAGTTTTCTATGGAAATGATTCCTTTTATGTGCTTTTTAGACTTCATCAGACATTGTATGAGAGGATACAATCAGCGAAGATTAACTCATCATCTGCTGATAGGAAATGGAAGGCTTCGAGTGATACAAGCTCTACTGATCAATATGACAGATTCATGAATGCCCTTTACAGTTTGCTGGATGGTTCTTCTGATAACACAAAATTTGAGGATGATTGTCGAGCTATAGTTGGAATTCAGTCATATGTCTTATTCACATTAGACAAGCTGATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCTGCTGATGAGATGGATAGTAAGCTTCTACAACTGTATGCATATGAGAAATCAAGAAAACCTGAAAAATTTGTCGACATAGTTTATCATGAAAATGCCCGAGTTCTTCTCCATGATGAGAATATATATCGGGTTGAATTTTCACCTGGAGCAACGAAACTGTCTGTTCAACTGATGGACTCTGGACATGATAAACCTGAAGTGACTGCTGTTTCAATGGACCCAAATTTTTCAACCTATCTACTCAACGACTTCCTGTCTGTCGTCCCTGACAAAAAAGAGAAGTCAGGGATTTTCTTGAAGAGGAACAAACGTAGATATGCTGGTAGTGATGAATTTTCAAGCCAGGCTATGGAAGGACTACAAATTATTAATGGTCTGGAGTGCAAGATAGCTTGCAGTTCATCGAAGGTCTCTTACGTTTTAGATACTGAAGACTTTTTGTATCGGGTGAGAAGGAAACGAAGAATCTTGCATCCAAAGAGTTCAGGCACCCATGAACAGGCACAGTCCTCAAACATTCGTTCAAGAAGAGTACAACGATTCCGCAACTTGTTTTCCATTACATGA 4287 0.4084 MKRSRDEVFTSCSQLKRPVVSARGEASGQQQMANGGAQKLTTNDALAYLKAVKDIFQDKRDKYDDFLEVMKDFKAQRIDTAGVIARVKELFKGHRDLILGFNTFLPKGYEITLPSEDEQPAPKKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILNMYRKENKSITEVYQEVAAIFQDHPDLLDEFTHFLPDASAAASTHYASARNSILRDRSSIPTVRPMHVEKRERTMVSHGDHDPSGDRPDLDHDRGLLRIEKERRRVEKEKERREDRDKREREKDDRDYEHDRERFPHKRNRKVEDSGAEPLLDADENFVMRPMSSTCDDKNSLKSMYSQELAFCEKVKEKLRNPDDYQEFLKCLHIYSREIITRQELQSLVGDLLGKYPDLMEGFNEFLLQSEKNDGGFLAGVMNKKSLWNDGHGLKQMKGEDRERERDRDRDRYRDDGMKERDREFRERDKSTVIANKDVLGSKMSLYPSKDKYLSKPINELDLSNCDQCTPSYRLLPKNYPIPIASQKTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLDKINNNTIKGDIPIRIEEHLTAINLRCIERLYGDHGLDVMEVLRKNAPLALPVILTRLKQKQEEWARCRADFSKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISEKKRKEDDVLLAIAAGNRWPILPNLEFKYSDLDIHEDLYQLIKYSCGEICTTEHVDKVMKVWTTFLEPMLCVPSRPQGAEDTEDVIKTKNSNVKNGTASVAESDGSPIVGATIMNPKHINVSRNGDGCMPEPVDQSTSSKAWQSNGDSGVREDRYLDDRAMRKTETLGSNSQHGKMNNIAFPPNELSGFNNKQDQSSERLVNANVSPASGMEQSNGRTNIDNLSGLTATPTRPVNASAGGGPDIPPLEGGDSARPGTSSNGAITGGTKVHRYQEESVRPFKSEREEGELSPNGDIEEDNFEVYGGNGLDAVHKEKDGGMSRQYQDRHGDDVCGETRGENDVDADDEGEESPHRSSEDSENASENVDVSGSESADGEECSREEHEDGEHDHKAESEGEAEGIADAHDVEGDGMSLPYSERFLLTVNPLAKYVPPMLHEKDRNSRVFYGNDSFYVLFRLHQTLYERIQSAKINSSSADRKWKASSDTSSTDQYDRFMNALYSLLDGSSDNTKFEDDCRAIVGIQSYVLFTLDKLIYKLVKQLQAVAADEMDSKLLQLYAYEKSRKPEKFVDIVYHENARVLLHDENIYRVEFSPGATKLSVQLMDSGHDKPEVTAVSMDPNFSTYLLNDFLSVVPDKKEKSGIFLKRNKRRYAGSDEFSSQAMEGLQIINGLECKIACSSSKVSYVLDTEDFLYRVRRKRRILHPKSSGTHEQAQSSNIRSRRVQRFRNLFSIT* 1429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g01182 1428 FunFam Paired amphipathic helix protein Sin3 44 106 - -
Phac2g01182 1428 SUPERFAMILY PAH2 domain 38 107 IPR036600 GO:0006355
Phac2g01182 1428 MobiDBLite consensus disorder prediction 1004 1034 - -
Phac2g01182 1428 MobiDBLite consensus disorder prediction 422 454 - -
Phac2g01182 1428 MobiDBLite consensus disorder prediction 967 985 - -
Phac2g01182 1428 FunFam Paired amphipathic helix protein SIN3 326 400 - -
Phac2g01182 1428 Gene3D Paired amphipathic helix 44 106 IPR036600 GO:0006355
Phac2g01182 1428 MobiDBLite consensus disorder prediction 1042 1056 - -
Phac2g01182 1428 SMART hdac_interact2seq4b 493 593 IPR013194 -
Phac2g01182 1428 MobiDBLite consensus disorder prediction 420 454 - -
Phac2g01182 1428 SUPERFAMILY PAH2 domain 327 395 IPR036600 GO:0006355
Phac2g01182 1428 ProSiteProfiles PAH domain profile. 329 398 IPR003822 GO:0006355
Phac2g01182 1428 MobiDBLite consensus disorder prediction 1069 1094 - -
Phac2g01182 1428 MobiDBLite consensus disorder prediction 827 842 - -
Phac2g01182 1428 Pfam Paired amphipathic helix repeat 351 395 IPR003822 GO:0006355
Phac2g01182 1428 Pfam Paired amphipathic helix repeat 61 105 IPR003822 GO:0006355
Phac2g01182 1428 Pfam Paired amphipathic helix repeat 147 191 IPR003822 GO:0006355
Phac2g01182 1428 MobiDBLite consensus disorder prediction 213 310 - -
Phac2g01182 1428 Pfam Sin3 family co-repressor 496 587 IPR013194 -
Phac2g01182 1428 Pfam C-terminal domain of Sin3a protein 1141 1387 IPR031693 -
Phac2g01182 1428 Coils Coil 252 275 - -
Phac2g01182 1428 MobiDBLite consensus disorder prediction 826 847 - -
Phac2g01182 1428 Gene3D Paired amphipathic helix 123 195 IPR036600 GO:0006355
Phac2g01182 1428 MobiDBLite consensus disorder prediction 861 1094 - -
Phac2g01182 1428 Gene3D Paired amphipathic helix 327 399 IPR036600 GO:0006355
Phac2g01182 1428 PANTHER SIN3B-RELATED 38 1284 IPR039774 GO:0003714
Phac2g01182 1428 SUPERFAMILY PAH2 domain 122 193 IPR036600 GO:0006355
Phac2g01182 1428 ProSiteProfiles PAH domain profile. 38 108 IPR003822 GO:0006355
Phac2g01182 1428 ProSiteProfiles PAH domain profile. 124 194 IPR003822 GO:0006355
Phac2g01182 1428 MobiDBLite consensus disorder prediction 218 305 - -
Phac2g01182 1428 FunFam Paired amphipathic helix SIN3-like protein 123 194 - -
Phac2g01182 1428 MobiDBLite consensus disorder prediction 861 930 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g01182 Phac-Chr2 8497412 8509899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g01182 33 143 WRKY Transcription Factor Family AT4G12020 50.450 1.07e-23 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phac2g01182 Sin3a_C 5e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g01182 K11644 - gmx:100811928 2524.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac2g01182 2 8497412 8509899 Phac2g01182 2 8497412 8509899 ECH