Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g01097 ATGTATAGGGTTCACTCTCAAATCCTTCTCAGCAATGGTGTGTTCACCAACCCCCCTATTCTTTCTCCATATTCTTCATCTTCTTCTTCCCCCTCGGTGCCTTATGTTTCCAACTACCAGAAACAATCAGCTCCATCCCCAACTTCTTCATCGGGGAGCAAAATAAGCCCTGCAATTCTTTTCATCATAGTCATTTTAGCTGTGGTGTTTTTCATCTTGGGTCTCCTTCACTTGCTTGTTAGATTTCTCATAAAGCACAGGTCTTCTAACTCATCGATTTCCCAATCTAATAGATACCCTGACATGTCCGAATCAGATGCTTACCAGAGACAGTTACAACAGCTCTTCCATCTTCATGATTCAGGCCTGGATCAGGCTTTCATAGATGCTCTCCCTGTCTTCTTTTACAAAGAGATTATAGGCTTGAAAGAGCCATTTGATTGTGCTGTTTGCCTCTGTGAGTTCTTGGAACAAGACAAATTGAGATTGTTGCCCACGTGTAACCATGCTTTTCACATTGAATGCATAGATACATGGTTGTTGTCCAACTCAACTTGCCCTCTCTGTAGAGGGACTCTGTATTCACCAGGCTTTGCCTTTGAGAACTCAGCTTTTGACTTTGAAAGTCAACTTGAGGAAGATGGGGAGTCAGGCAGTGGTGGAGTTGGGGTTGGGGTTGGTTCTTTTCACAAAACTGTAGAAAGTCACATACTGAATGGGAAAAGGGTGTTTTCTGTTAGGCTTGGAAAATTTAGAAGCTCTAATAATGGAGATGGGGTGGAGAGAGGTGAAAGTGAGAGCAGTAGAGGAAATTTGGATGTGAGGAGATGCTATTCAATGGGGTCTTTTCAGTATGTGGTGGCTGATTCAGATCTGAGAGTGGCTTTAGGCCCTCCTAAAGGTGATGGAGGGAGCAGTTGCAGCATGAGACAACTGAACGGAAGAGCAGCCCCAAATGGAAGTTCTTTCATTGATGCCGATACTGAGGGTAAGAAAATCAACCTTGCAAGAAAAGGTGAAAGCTTTTCTATTTCCAAGATCTGGCAATGGTCTAGGAAAGATAAATTGTCCGGTTCATCTGATGCTCATTTTCATAATTCTACTGTCACTGCAACTTTGCCATGGATGAATAAAGCCAGAGTTACAGAACTTGTAAATTGTGCCATAAACATAATCAGGCAATGCTCTTTGAACAAGAATTAA 1203 0.4248 MYRVHSQILLSNGVFTNPPILSPYSSSSSSPSVPYVSNYQKQSAPSPTSSSGSKISPAILFIIVILAVVFFILGLLHLLVRFLIKHRSSNSSISQSNRYPDMSESDAYQRQLQQLFHLHDSGLDQAFIDALPVFFYKEIIGLKEPFDCAVCLCEFLEQDKLRLLPTCNHAFHIECIDTWLLSNSTCPLCRGTLYSPGFAFENSAFDFESQLEEDGESGSGGVGVGVGSFHKTVESHILNGKRVFSVRLGKFRSSNNGDGVERGESESSRGNLDVRRCYSMGSFQYVVADSDLRVALGPPKGDGGSSCSMRQLNGRAAPNGSSFIDADTEGKKINLARKGESFSISKIWQWSRKDKLSGSSDAHFHNSTVTATLPWMNKARVTELVNCAINIIRQCSLNKN* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g01097 400 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 50 348 - -
Phac2g01097 400 ProSiteProfiles Zinc finger RING-type profile. 148 190 IPR001841 -
Phac2g01097 400 SUPERFAMILY RING/U-box 127 196 - -
Phac2g01097 400 CDD RING-H2_EL5-like 147 190 - -
Phac2g01097 400 Pfam Ring finger domain 147 190 IPR001841 -
Phac2g01097 400 SMART ring_2 148 189 IPR001841 -
Phac2g01097 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 195 IPR013083 -
Phac2g01097 400 FunFam RING-H2 finger protein ATL46 110 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g01097 Phac-Chr2 7397275 7398599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g01097 49 360 C3H Transcription Factor Family AT2G18650 42.647 3.97e-60 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g01097 - - gmx:100805154 571.622