Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g01084 ATGAAATCAAATCAAAACTATCATATGATCCAAACACAAAAGTCCAACACAAACCTTTCCATGATCCGAAACACAAGCGGGTCGGGTCGCCGGATACTAACATTTCCGGCGGTTCATCCATGCGAAAGCATCGGTCCCTCTATCCTTCTCCCTTCACTCATCACTCTCTACAACGCCATTTCCTCTTTCCAACACAGGTTCTCGTGTTTCCCTTGCAACAAGCGAAACGCGAGAAACGCGATTCGTTTGACCCTGCTTCTCCAACCTTTCCTTCATGAAATCCGAGACTGCCATTCGGGTCTTCCTGATCCGGCAACCCTGAGCCTCTCCGAGCTCCATTTAACCTTCCAGAAGCTTCTTTTCCTTCTTGAAGATCTCTCCCGTGAAGGTGCCAAGCTTTACATGTTGATGGAATCGGATCGGGTTGCCACTCAATTTCGGGTCATATCCAGATCCGTGGCCACTGCTTTAGACGTTTTCCCTTTCGGTTCTGTGGAGATCTCAAAGGAAACCAAAGAGCACGTTTTTCTGCTGAATGAACAAGCAAGGAAGGCCATATTTGAATTTGAGGAAGAAGATAAACGGGTTGTGATGAGTGTCGTGTCGGTTTTGACCCGGTTTGAGAATCAGGTTGCTCCGGATGAGGGTGATCTGAAGTGGGTCATTGAGTATATTGGGGTTAAAGGGTGGAGTGAGTGTAACAAGGAGGTGAAGTTTTTGGAGGGAGAAATTGGGTTTAAGGGCTTCAATGAGAAGAGGAATAAGGTGATACTTTTGAGTAGTTTGGTGGGGTTCATGAGTTATTGTAGATGCCTTGTGATGGAGGTTGTTGACTGTGAAGAGAGTGACAAAAAATTTGATGGAAGAGAAAGTAATGTTCAAAGTGAGATGGATCTGAGTTTGAGTTGTCTTAACCCCGATGATTTTCGATGTCCAATCACTTTGGAATTGATGAGTGATCCAGTGACAATAGAGACAGGTCATACGTATGATCGTTCTTCAATTCTGAAGTGGTTCAGAAGTGGGAATTTGACGTGTCCCAACACGGCTAAAAAGCTTATCACCACTGAAATGGTTCCAAACTTGGTGCTTCGGAAGTTGATTCAGCGGTATTGCTTTGCGAATGACATAAGCATTCCCTTTGTTGACTTGGGTCGTAGGAATCGTGAGATTACTAGGAGAGTGGAGCCTGGGAGTGTAGCAGCAGAGGGAGCAATGAGAATGTTGGCTAGTTTTCTGAAAGGAAGGATTGAGAATGGAAGTGGGGAAGAGATGAATAGAGGTGCATTTGAGATAAGGCTTCTTTCCAAGACAAGCATTTTTAATAGGTCTTGTTTGGTGGAAGCTGGTTTGGTGCCTCTTTTGTTGAAGTTGTTGTCATCGAGGGATTCGTTGACTCAAGAGAATGCTGCCGCAGCCCTTCTAAACCTCTCAAAATGTGCAAAGAGTAGAAGTGTGATGGTTGAGAAATGGGGTTTGGAATTAATTGTTGGGGTTTTAAAGAAGGGAGTGAAGATTGAAGCTCGCCAGCATGTTGCTGCTGTGTTGTTTTACCTTAGTGCTGAGTATGGGAACTTGTTAGGGAAAGAGCCAGAAGCAATTCCATCATTGATAAGGCTTGTCAAAGATGGCCCTTATCGGAGCAAGAAAAATGGGTTGGTTGCAATGTTTGGCCTTCTTAAGCACCCTGAAAATCATAGGAGGGTGGTCGAAGGTGGAGCAGTTCCTTTGCTAGTTGGCATCTTGAAAGGATCTGAAAATGAAGACCTTATCACAGATTCACTGGCAGTTCTAGCAACTCTGGCAGAGAAGAGAGAGGGAATGTTTGCAATTCTTCACGAAGAGGCTTTGCATGTAGCTGTTGAAATTTTGAGTTGTTCCACTTCGAGGGTGGGAAGGGAGCACTGTGTGGCCCTATTGCTTTCTTTGTCTCTAAAGGGTGGAGAGGATGTGGTTGCTTATTTAGTGAAGAGTCCTTCTCTTATGGAATCCTTGTATTCCCAACTAAGCGCAGGCACATCTAGAGCAAGCAAGAAAGCCAGTGCTCTCATTAGGGTCCTCCATGATTTTTATGAAAGGAGGTCCTCTGGATTTAAGATTTCAGTTATTCCACAAGAACAGTTCATTCATGTTAGGTAA 2139 0.4451 MKSNQNYHMIQTQKSNTNLSMIRNTSGSGRRILTFPAVHPCESIGPSILLPSLITLYNAISSFQHRFSCFPCNKRNARNAIRLTLLLQPFLHEIRDCHSGLPDPATLSLSELHLTFQKLLFLLEDLSREGAKLYMLMESDRVATQFRVISRSVATALDVFPFGSVEISKETKEHVFLLNEQARKAIFEFEEEDKRVVMSVVSVLTRFENQVAPDEGDLKWVIEYIGVKGWSECNKEVKFLEGEIGFKGFNEKRNKVILLSSLVGFMSYCRCLVMEVVDCEESDKKFDGRESNVQSEMDLSLSCLNPDDFRCPITLELMSDPVTIETGHTYDRSSILKWFRSGNLTCPNTAKKLITTEMVPNLVLRKLIQRYCFANDISIPFVDLGRRNREITRRVEPGSVAAEGAMRMLASFLKGRIENGSGEEMNRGAFEIRLLSKTSIFNRSCLVEAGLVPLLLKLLSSRDSLTQENAAAALLNLSKCAKSRSVMVEKWGLELIVGVLKKGVKIEARQHVAAVLFYLSAEYGNLLGKEPEAIPSLIRLVKDGPYRSKKNGLVAMFGLLKHPENHRRVVEGGAVPLLVGILKGSENEDLITDSLAVLATLAEKREGMFAILHEEALHVAVEILSCSTSRVGREHCVALLLSLSLKGGEDVVAYLVKSPSLMESLYSQLSAGTSRASKKASALIRVLHDFYERRSSGFKISVIPQEQFIHVR* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g01084 712 Pfam Armadillo/beta-catenin-like repeat 442 478 IPR000225 GO:0005515
Phac2g01084 712 SMART arm_5 562 603 IPR000225 GO:0005515
Phac2g01084 712 SMART arm_5 438 479 IPR000225 GO:0005515
Phac2g01084 712 SMART arm_5 480 521 IPR000225 GO:0005515
Phac2g01084 712 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 379 IPR013083 -
Phac2g01084 712 SUPERFAMILY ARM repeat 403 687 IPR016024 -
Phac2g01084 712 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 450 492 IPR000225 GO:0005515
Phac2g01084 712 Pfam U-box domain 306 374 IPR003613 GO:0004842|GO:0016567
Phac2g01084 712 SMART Ubox_2 308 371 IPR003613 GO:0004842|GO:0016567
Phac2g01084 712 CDD RING-Ubox_PUB 306 358 IPR045210 -
Phac2g01084 712 ProSiteProfiles U-box domain profile. 304 378 IPR003613 GO:0004842|GO:0016567
Phac2g01084 712 FunFam RING-type E3 ubiquitin transferase 387 698 - -
Phac2g01084 712 SUPERFAMILY RING/U-box 306 377 - -
Phac2g01084 712 Gene3D - 385 694 IPR011989 -
Phac2g01084 712 FunFam RING-type E3 ubiquitin transferase 305 377 - -
Phac2g01084 712 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 573 616 IPR000225 GO:0005515
Phac2g01084 712 PANTHER U BOX DOMAIN-CONTAINING 75 687 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g01084 Phac-Chr2 7227659 7230045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g01084 21 710 U-box Gene Family AT1G60190 44.034 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g01084 - - vra:106779024 1201.42