Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g00953 ATGGAGCGCCACAAATGCAAGCTCTGTTCCAGAACATTCGCCAATGGCAGAGCCCTCGGTGGCCACATGAAGGCTCACTTAGCCACCCTTCCTCTTCCCCCCAAACCCCAACGTCTCCCTCACTCTCTTAATACTTTCTCTTCCAATTCCTCTTCACGTGAAGAGTTACAAGACGATGACAACGAAGAAGAAGATGAAGAAGAAGAAGAAGAAAAGGCTCTGATCAACTACGCCTTGCGAGAGAATCCCAAGAAATGCTTCAGGCTCGCAGATCCCGAGTTCGACTCGGGCTCTGTCGTGCAAGACAGGGAGAGCGAGACCGAGTCAAAGAACCCAACTCGCCGACGATCCAAGCGGCCACGCAGGCCCGCCAATTCCCAACCCAAAGCCCGGCCCAAACTCAGCTTCATGGAGTCCCCCGAGCCCGTAAGCTCCGTCTCCGACACTTCCCCCGAGGAAGATGTGGCCATGTGTCTCATGATGCTGTCCAGGGACCGGTGGAGCAAGAACAGCAACGTGGTTGTCGGCAACGACGTTGTCGAAGAGGAAGAAGAGAGATCAGTGGAAGAGATCAAGTTGAGGAGAGTTCGCCGGAAGCACCAGTGCGAGAGTTGCGAGAAGACGTTTCGATCTTCACGTGCATTGGGCAGTCACCGAAGCATCTGCGGAGGGTCGGGTAACGATAGTAAAATCTTCGAATGCCCCTTTTGTTCTAAGGTGTTTGGGTCTGGTCAAGCACTGGGTGGCCACAAGAGATCTCACCTGCTACCTTCTTCCTCCTCCACCGCGAATGATTCCACCAGGTTCAAAGACAGCTTCATAGATCTCAACTTGCCTGCTCCAACCGAAGAAGACGACCTCAGTGTTGTTTCTGATGCCCAATTCGATGACTAA 894 0.5324 MERHKCKLCSRTFANGRALGGHMKAHLATLPLPPKPQRLPHSLNTFSSNSSSREELQDDDNEEEDEEEEEEKALINYALRENPKKCFRLADPEFDSGSVVQDRESETESKNPTRRRSKRPRRPANSQPKARPKLSFMESPEPVSSVSDTSPEEDVAMCLMMLSRDRWSKNSNVVVGNDVVEEEEERSVEEIKLRRVRRKHQCESCEKTFRSSRALGSHRSICGGSGNDSKIFECPFCSKVFGSGQALGGHKRSHLLPSSSSTANDSTRFKDSFIDLNLPAPTEEDDLSVVSDAQFDD* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g00953 297 Gene3D Classic Zinc Finger 176 255 - -
Phac2g00953 297 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 295 IPR044303 GO:0006355
Phac2g00953 297 SMART c2h2final6 200 220 IPR013087 -
Phac2g00953 297 SMART c2h2final6 232 254 IPR013087 -
Phac2g00953 297 SMART c2h2final6 4 26 IPR013087 -
Phac2g00953 297 Pfam C2H2-type zinc finger 3 28 - -
Phac2g00953 297 Pfam C2H2-type zinc finger 232 254 - -
Phac2g00953 297 Pfam C2H2-type zinc finger 200 219 - -
Phac2g00953 297 ProSitePatterns Zinc finger C2H2 type domain signature. 234 254 IPR013087 -
Phac2g00953 297 Coils Coil 179 199 - -
Phac2g00953 297 MobiDBLite consensus disorder prediction 30 76 - -
Phac2g00953 297 Coils Coil 49 73 - -
Phac2g00953 297 SUPERFAMILY beta-beta-alpha zinc fingers 3 29 IPR036236 -
Phac2g00953 297 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Phac2g00953 297 MobiDBLite consensus disorder prediction 56 72 - -
Phac2g00953 297 MobiDBLite consensus disorder prediction 95 113 - -
Phac2g00953 297 MobiDBLite consensus disorder prediction 95 150 - -
Phac2g00953 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 232 254 IPR013087 -
Phac2g00953 297 SUPERFAMILY beta-beta-alpha zinc fingers 198 254 IPR036236 -
Phac2g00953 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g00953 Phac-Chr2 6009707 6011726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g00953 1 290 C2H2 Transcription Factor Family AT3G60580 37.309 4.16e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phac2g00953 zf-C2H2_6 1.8e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g00953 - - vun:114173003 476.863