Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g00784 ATGAATTACAGGGATAATGTTCTCTCCGATACCCCTCTGGATAACAACACGGGTTTCAGTGTGAAGAATAAAAACAATCAAGCTAATTGGAAAGCTCTTTGGATGAAATCCGAATCCGATTCATCTTCCAATTTGGACAATGGATGGATGGTGCCCTATAAATACTATCATGTCAAGGGTCCCATTTCTGATTCAAACCCTAATGTTGACTCGTCAAGATGGGTTTTGTGCAACGAGGTTCAATTGAAAGACATTTCGTTGAAATGCATGGAAATTATATACAAAGATACTGTGTCAAAGCTTGTTGCTTTGGGGCACAATGAGGATATTGCCGTGAAAGCGATTCTGCAAAATGTTCATTGTTATGGCGCCAACGATTTGGCAACAGACCTGCTGCACAATACCTTGGCTTGTTTGACAAAGGGGAGCTTGGACATGTATGAGTCCAAGCCCGCGTTCTCTGATTTGAAGAAGCTTGAGGAGTACACTTTGATGAATCTTGTGTTTTTGTTGCAAGAAGTGAGGCTCGAGTTAGGTGAGGGTGATGCTATGTGGTGTCTCCTCATGAGCGATTACAATGTGTTAAAGGCAATTACCGTCCATATTCCTGTTGTAAGCATGTGTCCTCCTCCTTTACCCGAGCTTGAGAGCGAGGAAGGGGGATTTAGAAAAGAGGGAGGCTCAGATATTCCTTTAAAAGGGTTCTTTTGTGGTAAGGAGATGACTGTACGGTTACAGAGAGATATTGAATTCCCGAAAAGATTTGATCTTACTCCTGCGATGATTTGTTCGTTGAAAAGCAATGTTGCAGTGTTTGCTGATGGTTATAAGGCCAACTCAAAACAGGTCCAGTCCAATGCAGGAAAACTTCCTGTGATTAGCACTGTTTCGAAATTGGACTCTTCGTCTGTTTCTGTGACTGCAGTCCTTGGTGATCTGTCTGGTGACTCTCAGAATATGAATGACCAGGATGACTTTAACTCTGTGTTGAGTAAATTTCATGATCTAAATATTGATGAGAACTTGGAGTTTGTGGCAGAAGATGAGAAAAATTCGGTGATAGTCACTCTATTGCATCAGATAAAGGATCTTGAGAAACAGGTAAAGGAGCGGAAAGATTGGGCTCATGAGAAGGCAATCCAAGCTGCAAGAAAGCTTAACAGCTATCTAATTGAGCTGAAAACATTCAGGATAGAAAAAGAGGAGAATCAAAGACTGAAGAAGGGGAAAGAGGAAAATGAGGAGCTTGAGGACCCTACCATGGTGAGACTCTTAGAAATGGAGGAGGCTTTGAGAAAGGCTTGTGGTCAAATGGATCTAGCAGCTGCAGGAGTCGGAAAACTTGAGGCGCAGAAAGCTGAAATCAAAGCAGAGTTAGAAGCTTGTAAATTAAGTGCATCAGAGTCAGTCGCAAGCTGCTTGCAAATTGCAAAAAGGGAGAAAAAGTGCTTAAAGAAACTTCTGGCTTGGGAAAAACAGGAAGCGAAGATAAAACAGGATATTTCAGATGAAAAACAGAAGATTTTGGAGATACAAGAAGAGTTGGCTCAGATTAAAAAACGTGCAAAAGAAGCTGAGTTTTTGCCCCGTGCTTTCTTAGTTTTCTGCTCGGTCATGAAGGGTGAAGAGTTAAAGGCTAAGGAGGAAGCCTTAGCACTGATTGAAGAGGAACGCCGTTCTGTGGAAGCAGCTGAGGCTAATAGAAAAAGAAATCTTAAGGCTTTAAGCCTGAAGATGGAGATAGATTTCCAGCGTCGCAAGGATGATCTCCTAAGACTGGAGCAGGAGATTTCGTGTCTTAAAGCATCTGCACAGTCGGCTATTTTGCCTACAAGTGAGTCTGAGGGTGCAGAGCCCCACAGAGAGATAATTGTTAAGCTTCTGCAAGAATTAGATAGTGTACCAGATTTTTCTGGAAAAGAAGCCACCGGTAATACTGATAGAGAATGCATTATATGTGGAAAAGATGAGGTTTCCGTAATTTTCTTGCCATGTGCACACCAAGTTATGTGTGCCAGTTGCAGTAAAGAGTATGGGAGAAATGGCAAAGCTATTTGTCCATGCTGTTGGGTTCCAATCGAACAGAGAATTCGTATATATGGGGCAAGTTCGTAG 2115 0.4213 MNYRDNVLSDTPLDNNTGFSVKNKNNQANWKALWMKSESDSSSNLDNGWMVPYKYYHVKGPISDSNPNVDSSRWVLCNEVQLKDISLKCMEIIYKDTVSKLVALGHNEDIAVKAILQNVHCYGANDLATDLLHNTLACLTKGSLDMYESKPAFSDLKKLEEYTLMNLVFLLQEVRLELGEGDAMWCLLMSDYNVLKAITVHIPVVSMCPPPLPELESEEGGFRKEGGSDIPLKGFFCGKEMTVRLQRDIEFPKRFDLTPAMICSLKSNVAVFADGYKANSKQVQSNAGKLPVISTVSKLDSSSVSVTAVLGDLSGDSQNMNDQDDFNSVLSKFHDLNIDENLEFVAEDEKNSVIVTLLHQIKDLEKQVKERKDWAHEKAIQAARKLNSYLIELKTFRIEKEENQRLKKGKEENEELEDPTMVRLLEMEEALRKACGQMDLAAAGVGKLEAQKAEIKAELEACKLSASESVASCLQIAKREKKCLKKLLAWEKQEAKIKQDISDEKQKILEIQEELAQIKKRAKEAEFLPRAFLVFCSVMKGEELKAKEEALALIEEERRSVEAAEANRKRNLKALSLKMEIDFQRRKDDLLRLEQEISCLKASAQSAILPTSESEGAEPHREIIVKLLQELDSVPDFSGKEATGNTDRECIICGKDEVSVIFLPCAHQVMCASCSKEYGRNGKAICPCCWVPIEQRIRIYGASS* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g00784 704 Coils Coil 445 465 - -
Phac2g00784 704 Coils Coil 494 528 - -
Phac2g00784 704 Coils Coil 544 574 - -
Phac2g00784 704 ProSiteProfiles Zinc finger RING-type profile. 650 689 IPR001841 -
Phac2g00784 704 PANTHER OS05G0141500 PROTEIN 44 699 IPR046934 -
Phac2g00784 704 Pfam Zinc finger, C3HC4 type (RING finger) 647 695 - -
Phac2g00784 704 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 638 701 IPR013083 -
Phac2g00784 704 SUPERFAMILY RING/U-box 630 696 - -
Phac2g00784 704 CDD RING-HC_MIP1-like 645 699 - -
Phac2g00784 704 Pfam Family of unknown function (DUF6592) 90 199 IPR046527 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g00784 Phac-Chr2 4841126 4844689 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g00784 588 699 C3H Transcription Factor Family AT3G06140 28.873 1.81e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g00784 - - vra:106777712 1144.8