Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g00782 ATGAATTACAGGGATAATGTTCTCTCCGATACCCCTCTGGATAACAACACGGGTTTCAGTGTGAAGAATAAAAACAATCAAGCTAATTGGAAAGCTCTTTGGATGAAATCCGAATCCGATTCATCTTCCAATTTGGACAATGGATGGATGGTGCCCTATAAATACTATCATGTCAAGGGTCCCATTTCTGATTCAAACCCTAATGTTGACTCGTCAAGATGGGTTTTGTGCAACGAGGTTCAATTGAAAGACATTTCGTTGAAATGCATGGAAATTATATACAAAGATACTGTGTCAAAGCTTGTTGCTTTGGGGCACAATGAGGATATTGCCGTGAAAGCGATTCTGCAAAATGTTCATTGTTATGGCGCCAACGATTTGGCAACAGACCTGCTGCACAATACCTTGGCTTGTTTGACAAAGGGGAGCTTGGACATGTATGAGTCCAAGCCCGCGTTCTCTGATTTGAAGAAGCTTGAGGAGTACACTTTGATGAATCTTGTGTTTTTGTTGCAAGAAGTGAGGCTCGAGTTAGGTGAGGGTGATGCTATGTGGTGTCTCCTCATGAGCGATTACAATGTGTTAAAGGCAATTACCGTCCATATTCCTGTTGTAAGCATGTGTCCTCCTCCTTTACCCGAGCTTGAGAGCGAGGAAGGGGGATTTAGAAAAGAGGGAGGCTCAGATATTCCTTTAAAAGGGTTCTTTTGTGGTAAGGAGATGACTGTACGGTTACAGAGAGATATTGAATTCCCGAAAAGATTTGATCTTACTCCTGCGATGATTTGTTCGTTGAAAAGCAATGTTGCAGTGTTTGCTGATGGTTATAAGGCCAACTCAAAACAGGTCCAGTCCAATGCAGGAAAACTTCCTGTGATTAGCACTGTTTCGAAATTGGACTCTTCGTCTGTTTCTGTGACTGCAGTCCTTGGTGATCTGTCTGGTGACTCTCAGAATATGAATGACCAGGATGACTTTAACTCTGTGTTGAGTAAATTTCATGATCTAAATATTGATGAGAACTTGGAGTTTGTGGCAGAAGATGAGAAAAATTCGGTGATAGTCACTCTATTGCATCAGATAAAGGATCTTGAGAAACAGGTAAAGGAGCGGAAAGATTGGGCTCATGAGAAGGCAATCCAAGCTGCAAGAAAGCTTAACAGCTATCTAATTGAGCTGAAAACATTCAGGATAGAAAAAGAGGAGAATCAAAGACTGAAGAAGGGGAAAGAGGAAAATGAGGAGCTTGAGGACCCTACCATGGTGAGACTCTTAGAAATGGAGGAGGCTTTGAGAAAGGCTTGTGGTCAAATGGATCTAGCAGCTGCAGGAGTCGGAAAACTTGAGGCGCAGAAAGCTGAAATCAAAGCAGAGTTAGAAGCTTGTAAATTAAGTGCATCAGAGTCAGTCGCAAGCTGCTTGCAAATTGCAAAAAGGGAGAAAAAGTGCTTAAAGAAACTTCTGGCTTGGGAAAAACAGGAAGCGAAGATAAAACAGGATATTTCAGATGAAAAACAGAAGATTTTGGAGATACAAGAAGAGTTGGCTCAGATTAAAAAACGTGCAAAAGAAGCTGAGGTCATGAAGGGTGAAGAGTTAAAGGCTAAGGAGGAAGCCTTAGCACTGATTGAAGAGGAACGCCGTTCTGTGGAAGCAGCTGAGGCTAATAGAAAAAGAAATCTTAAGGCTTTAAGCCTGAAGATGGAGATAGATTTCCAGCGTCGCAAGGATGATCTCCTAAGACTGGAGCAGGAGATTTCGTGTCTTAAAGCATCTGCACAGTCGGCTATTTTGCCTACAAGTGAGTCTGAGGGTGCAGAGCCCCACAGAGAGATAATTGTTAAGCTTCTGCAAGAATTAGATAGTGTACCAGATTTTTCTGGAAAAGAAGCCACCGGTAATACTGATAGAGAATGCATTATATGTGGAAAAGATGAGGTTTCCGTAATTTTCTTGCCATGTGCACACCAAGTTATGTGTGCCAGTTGCAGTAAAGAGTATGGGAGAAATGGCAAAGCTATTTGTCCATGCTGTTGGGTTCCAATCGAACAGAGAATTCGTATATATGGGGCAAGTTCGTAG 2082 0.4207 MNYRDNVLSDTPLDNNTGFSVKNKNNQANWKALWMKSESDSSSNLDNGWMVPYKYYHVKGPISDSNPNVDSSRWVLCNEVQLKDISLKCMEIIYKDTVSKLVALGHNEDIAVKAILQNVHCYGANDLATDLLHNTLACLTKGSLDMYESKPAFSDLKKLEEYTLMNLVFLLQEVRLELGEGDAMWCLLMSDYNVLKAITVHIPVVSMCPPPLPELESEEGGFRKEGGSDIPLKGFFCGKEMTVRLQRDIEFPKRFDLTPAMICSLKSNVAVFADGYKANSKQVQSNAGKLPVISTVSKLDSSSVSVTAVLGDLSGDSQNMNDQDDFNSVLSKFHDLNIDENLEFVAEDEKNSVIVTLLHQIKDLEKQVKERKDWAHEKAIQAARKLNSYLIELKTFRIEKEENQRLKKGKEENEELEDPTMVRLLEMEEALRKACGQMDLAAAGVGKLEAQKAEIKAELEACKLSASESVASCLQIAKREKKCLKKLLAWEKQEAKIKQDISDEKQKILEIQEELAQIKKRAKEAEVMKGEELKAKEEALALIEEERRSVEAAEANRKRNLKALSLKMEIDFQRRKDDLLRLEQEISCLKASAQSAILPTSESEGAEPHREIIVKLLQELDSVPDFSGKEATGNTDRECIICGKDEVSVIFLPCAHQVMCASCSKEYGRNGKAICPCCWVPIEQRIRIYGASS* 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g00782 693 Coils Coil 445 465 - -
Phac2g00782 693 Coils Coil 494 528 - -
Phac2g00782 693 ProSiteProfiles Zinc finger RING-type profile. 639 678 IPR001841 -
Phac2g00782 693 CDD RING-HC_MIP1-like 634 688 - -
Phac2g00782 693 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 627 690 IPR013083 -
Phac2g00782 693 Coils Coil 533 563 - -
Phac2g00782 693 Pfam Family of unknown function (DUF6592) 90 199 IPR046527 -
Phac2g00782 693 SUPERFAMILY RING/U-box 619 685 - -
Phac2g00782 693 PANTHER OS05G0141500 PROTEIN 44 688 IPR046934 -
Phac2g00782 693 Pfam Zinc finger, C3HC4 type (RING finger) 636 684 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g00782 Phac-Chr2 4841126 4844689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g00782 577 688 C3H Transcription Factor Family AT3G06140 28.873 1.97e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g00782 - - vra:106777712 1153.27