Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g00781 ATGCCCGTTCCGCTTGCCCCCTACCCTCCACCACCTCCATATACGCCTCCACCAAATGGTGCGCAGAGTCAAGTTGTCTGTTCTGGGTGTAGAAACCTTCTGCTTTATCCAGTTGGAGCCACCTCAGTGTGCTGTGCTGTTTGCAATGCAGTCACAACTGTGCCACCTCCTGAAATGGCCCAGTTAGTATGTGGAGGCTGCCACACTCTCCTCATGTTCATCCGTGGAGCCACAAATGTCCAATGCTCTTGTTGTCACACAGTCAATCTAGCTTTGGAAGCAAATCAGGTGGCACATGTCAACTGTGGGAACTGTGAGATGCTACTCAGGTACCAATATGGAGCAAGATCCGTGAAATGTGCCATTTGCAGTTTTGTAACATCCGTTGGGACCTCAACAATCACCACCACAGAGCAGAAATTCAGCACCTAA 432 0.5 MPVPLAPYPPPPPYTPPPNGAQSQVVCSGCRNLLLYPVGATSVCCAVCNAVTTVPPPEMAQLVCGGCHTLLMFIRGATNVQCSCCHTVNLALEANQVAHVNCGNCEMLLRYQYGARSVKCAICSFVTSVGTSTITTTEQKFST* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g00781 143 PANTHER PROTEIN LSD1 15 54 IPR040319 -
Phac2g00781 143 Pfam LSD1 zinc finger 102 126 IPR005735 -
Phac2g00781 143 Pfam LSD1 zinc finger 64 88 IPR005735 -
Phac2g00781 143 Pfam LSD1 zinc finger 27 51 IPR005735 -
Phac2g00781 143 NCBIfam zinc finger domain, LSD1 subclass 99 128 IPR005735 -
Phac2g00781 143 NCBIfam zinc finger domain, LSD1 subclass 61 90 IPR005735 -
Phac2g00781 143 NCBIfam zinc finger domain, LSD1 subclass 24 54 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g00781 Phac-Chr2 4834379 4837008 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Phac2g00781 zf-LSD1 8.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g00781 - - vun:114174628 240.35