Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g00780 ATGCCCGTTCCGCTTGCCCCCTACCCTCCACCACCTCCATATACGCCTCCACCAAATGGTGCGCAGAGTCAAGTTGTCTGTTCTGGGTGTAGAAACCTTCTGCTTTATCCAGTTGGAGCCACCTCAGTGTGCTGTGCTGTTTGCAATGCAGTCACAACTGTGCCACCTCCTGAAATGGCCCAGTTAGTATGTGGAGGCTGCCACACTCTCCTCATGTTCATCCGTGGAGCCACAAATGTCCAATGCTCTTGTTGTCACACAGTCAATCTAGCTTTGGAAGGTATTGAACCACAAATGATCAGATGA 306 0.5065 MPVPLAPYPPPPPYTPPPNGAQSQVVCSGCRNLLLYPVGATSVCCAVCNAVTTVPPPEMAQLVCGGCHTLLMFIRGATNVQCSCCHTVNLALEGIEPQMIR* 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g00780 101 NCBIfam zinc finger domain, LSD1 subclass 24 54 IPR005735 -
Phac2g00780 101 NCBIfam zinc finger domain, LSD1 subclass 61 90 IPR005735 -
Phac2g00780 101 MobiDBLite consensus disorder prediction 1 22 - -
Phac2g00780 101 Pfam LSD1 zinc finger 64 88 IPR005735 -
Phac2g00780 101 Pfam LSD1 zinc finger 27 51 IPR005735 -
Phac2g00780 101 PANTHER PROTEIN LSD1 15 54 IPR040319 -
Phac2g00780 101 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g00780 Phac-Chr2 4834379 4837008 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Phac2g00780 zf-LSD1 4.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g00780 - - vun:114174628 162.54