Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g00657 ATGAGAGTGAGGAGAGTAGTCACCGAAGCCGTTTGCTCAGGAAGCAACATGTCCACCATAACCTCCGTTGAACTCAACTATATCGTCTTTCGCTACCTTCACGAATCAGGTTTCATACACACTGCTTTTGCATTTGGAAATGAGGCTGGTATTAACAAAAGCTTCATTGATGGAACGCTTGTACCAATAGGTGCTCTTATTAGACTTGTTCAAAAGGGGCTACAGTACTTGGAGATGGAAGCCAACTTGAGTAATTGTGATATGAACCTGGATGAAGATTTTTCATTCTTACAACCTTTGGATCTTATCACAAAAGATGTGCATGAACTTGGGAAAATGGTTAATGAAAGATGGAAAAAACTACATAAGGATAGAAATAAGGAATCTGAAAAGGAGCATGAAGGTGGGCGAGGATGGGTAAAAGGAAAAGAAAGACATGAAAGGGCAAAAGAATGTGAAAAGGGTAGAGATCAGGCAAAAAATCTTAAAGAGGTAGAACAGAAGCGTGGCAATCAGACTAGTAAAGAACTGGTCACCGATCAAGAACAGAATAAAGCTTTTGGAGGACCAAAGCCGATGGACATTTCTACAGTATTAACACCGCAACCACGTGAAATCCGTAGGTCAGATGTGATGGTTTTAAAAGGTCATACTTCTGAGGTGTGTGCTTGTGCATGGAGTCCTACAGGATCTCTTCTAGCATCAGGGTCTGGGGATTCAACAGCTCGTATTTGGTCAATACCAGAAGGGAGATGCAAATCTGCTTCGCTGAATGACCCTCCAAATGTGTTTGTGTTGAAACATGTTAGGGGTAAAACAAATGAGAAGAGTAATGATGTCACTACACTTGATTGGAATGGGGAGGGGACACTTCTTGCAACTGGCTCATATGATGGGCAAGCAAGAATTTGGACCACCAATGGTGAACTGAGCAGTATTTTAAGCAAACACAAGGGACCCATATTCTCTTTGAAGTGGAATAAGAAAGGTGATTATCTTCTCACTGGAAGTTGTGACCAATCCGCAATTGTATGGGATGTGAAAGCTGTGAAATGGAAACAACAATTTGAATTTCATTCAGGTTGGACACTTGATGTTGACTGGCGCAACAATGTGTCATTTGCAACAAGCTCAACTGACACTAAAATACATGTATGCAAGATTGGCGAAAACCGCCCAATTAAAACTTTTGTTGGGCATCAGAGTGAAGTTAATTGTATCAAATGGGATCCCACTGGTTCATTATTGGCCTCTTGTTCTGATGATATGACGGCAAAGGTATGGAGTATGAAACACGATAAATATCTTCATGATTTTAGGGAGCATTCCAAGGAGATATATACTATCAGATGGAGCCCAACTGGTCCTGGTACAAATAACCCTAATAAAAATTTGGTGTTGGCTAGTGCATCATTTGATTCAACAATAAAGCTTTGGGATGTGGAACTTGGGAAACTTGTCTGCAACTTGAATGGACACGGTTGTTTGTTCGTGGTTGCTCTCGATCTTTGTCCTCGGTCCAGGGTGGGAGGGTACTTGCAAAAGGTCCTTCAACGCTCAAGTTAG 1566 0.4144 MRVRRVVTEAVCSGSNMSTITSVELNYIVFRYLHESGFIHTAFAFGNEAGINKSFIDGTLVPIGALIRLVQKGLQYLEMEANLSNCDMNLDEDFSFLQPLDLITKDVHELGKMVNERWKKLHKDRNKESEKEHEGGRGWVKGKERHERAKECEKGRDQAKNLKEVEQKRGNQTSKELVTDQEQNKAFGGPKPMDISTVLTPQPREIRRSDVMVLKGHTSEVCACAWSPTGSLLASGSGDSTARIWSIPEGRCKSASLNDPPNVFVLKHVRGKTNEKSNDVTTLDWNGEGTLLATGSYDGQARIWTTNGELSSILSKHKGPIFSLKWNKKGDYLLTGSCDQSAIVWDVKAVKWKQQFEFHSGWTLDVDWRNNVSFATSSTDTKIHVCKIGENRPIKTFVGHQSEVNCIKWDPTGSLLASCSDDMTAKVWSMKHDKYLHDFREHSKEIYTIRWSPTGPGTNNPNKNLVLASASFDSTIKLWDVELGKLVCNLNGHGCLFVVALDLCPRSRVGGYLQKVLQRSS* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g00657 521 FunFam F-box-like/WD repeat-containing protein TBL1XR1 18 109 - -
Phac2g00657 521 ProSitePatterns Trp-Asp (WD) repeats signature. 333 347 IPR019775 -
Phac2g00657 521 ProSiteProfiles Trp-Asp (WD) repeats profile. 439 489 IPR001680 GO:0005515
Phac2g00657 521 FunFam WD40 repeat-containing protein HOS15 202 509 - -
Phac2g00657 521 SUPERFAMILY WD40 repeat-like 211 505 IPR036322 GO:0005515
Phac2g00657 521 SMART WD40_4 349 387 IPR001680 GO:0005515
Phac2g00657 521 SMART WD40_4 207 246 IPR001680 GO:0005515
Phac2g00657 521 SMART WD40_4 432 480 IPR001680 GO:0005515
Phac2g00657 521 SMART WD40_4 262 305 IPR001680 GO:0005515
Phac2g00657 521 SMART WD40_4 390 429 IPR001680 GO:0005515
Phac2g00657 521 SMART WD40_4 307 346 IPR001680 GO:0005515
Phac2g00657 521 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 314 348 - -
Phac2g00657 521 Gene3D - 202 509 IPR015943 GO:0005515
Phac2g00657 521 ProSiteProfiles Trp-Asp (WD) repeats profile. 214 255 IPR001680 GO:0005515
Phac2g00657 521 PRINTS G protein beta WD-40 repeat signature 233 247 IPR020472 -
Phac2g00657 521 PRINTS G protein beta WD-40 repeat signature 333 347 IPR020472 -
Phac2g00657 521 PRINTS G protein beta WD-40 repeat signature 467 481 IPR020472 -
Phac2g00657 521 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 397 431 - -
Phac2g00657 521 MobiDBLite consensus disorder prediction 122 197 - -
Phac2g00657 521 CDD WD40 213 493 - -
Phac2g00657 521 ProSiteProfiles Trp-Asp (WD) repeats profile. 314 348 IPR001680 GO:0005515
Phac2g00657 521 Pfam LisH 24 49 IPR006594 GO:0005515
Phac2g00657 521 PANTHER WD40 REPEAT PROTEIN 20 493 IPR045183 GO:0003714|GO:0016575
Phac2g00657 521 MobiDBLite consensus disorder prediction 122 175 - -
Phac2g00657 521 ProSitePatterns Trp-Asp (WD) repeats signature. 467 481 IPR019775 -
Phac2g00657 521 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 273 304 - -
Phac2g00657 521 Gene3D - 17 108 - -
Phac2g00657 521 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 439 482 - -
Phac2g00657 521 SMART Lish 21 53 IPR006594 GO:0005515
Phac2g00657 521 ProSiteProfiles Trp-Asp (WD) repeats profile. 397 438 IPR001680 GO:0005515
Phac2g00657 521 ProSiteProfiles Trp-Asp (WD) repeats profile. 273 304 IPR001680 GO:0005515
Phac2g00657 521 ProSiteProfiles LIS1 homology (LisH) motif profile. 21 53 IPR006594 GO:0005515
Phac2g00657 521 Pfam WD domain, G-beta repeat 211 246 IPR001680 GO:0005515
Phac2g00657 521 Pfam WD domain, G-beta repeat 392 429 IPR001680 GO:0005515
Phac2g00657 521 Pfam WD domain, G-beta repeat 309 346 IPR001680 GO:0005515
Phac2g00657 521 Pfam WD domain, G-beta repeat 277 304 IPR001680 GO:0005515
Phac2g00657 521 Pfam WD domain, G-beta repeat 435 480 IPR001680 GO:0005515
Phac2g00657 521 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 214 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g00657 Phac-Chr2 3688540 3697948 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g00657 317 493 Miscellaneous Gene Families AT5G08390 22.905 2.34e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g00657 K04508 - gmx:100794963 823.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac2g00657 2 3688540 3697948 Phac2g00657 2 3688540 3697948 ECH
Phac2g00657 2 3688540 3697948 Phac3g03755 3 37394322 37405360 PCT