Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g00609 ATGGGCGACATGTACCACTTTGACAAGAATCTCTCTTCGCAGGACGAAATCTCACTTTTTCTGCGTCAGATTCTCCTCCGTTCATCTCCTTCTTCTTCTTCACCCCACTCCATGCCCGGATCCTGCAACTCCAACGTAGCTCACCAAAACGTCAATTCACACACTTCTTTTTCGCCCTCGCAGCTCCAACACGGCAAGATCTCGACCCTTGGTTCCACCGCCTCTTTTGTCTCGGCTTCTGCCGCTTGCGGTTCCTTCAAGGGCCAGACTGCTTCTGCTGCAAATGTGTCTTCTTCTTCTGTTTTAGTGAGCGAGAACGAGAATGATGACTATGATTGTGAAAGTGAGGAGGGTGTCGAAGCTTTCGCCGAAGAAGTTCCGACAAAACCTGTTCCTTCAAGGAGTTCATCTAAGAGATCAAGAGCTGCAGAAGTTCATAATTTGTCTGAGAAGCGAAGAAGGAGTAGGATCAACGAGAAAATGAAGGCCTTGCAAAATCTAATTCCGAATTCAAACAAGACGGATAAGGCTTCAATGCTCGATGAAGCTATTGAATACCTTAAACAGCTTCAGCTCCAAGTACAGATGCTGTCAATGCGAAATGGGTTGACTTTGCATCCTATGTGCTTTCCAGAAGGCTTGCAGCCACTGCAGTTGTCTCAGATGGGCATGGAAGGAAGTGAAAGAAACAGGTCTACCCCTTTAAACATGACAGCTACTCTGCCTCTCCACCAAGAGAACCCCTTGCACTACACATCCAATCTACCTAACAAGCACATTCTGCCAAATCAGCCATCAGCACCATATCCTTCATTTATTAACAACCCAGAAACGAAACCTCTTCAACACCAAGGAGGATCTTCTGAGCCAATACGCGGGGAAGACATTTTGCATTACCAGCAACCAAGTGCTATCCATTCAGATGCCAATACTCTAGGTGGTTCTCAAGTTGTGAAAGAATTCGAGTCAGGCACAACAGTTTCACTCTCCTTTGACACGCAAACATGTGAACCATGCATCGGCATTGGCAGAAGAGATGAGTCAGCAGTGATCATAAGAAATAGTGAGGCCAACATTGTTGTTACATCCCAGTTAAGTAGTAGGTAA 1107 0.4598 MGDMYHFDKNLSSQDEISLFLRQILLRSSPSSSSPHSMPGSCNSNVAHQNVNSHTSFSPSQLQHGKISTLGSTASFVSASAACGSFKGQTASAANVSSSSVLVSENENDDYDCESEEGVEAFAEEVPTKPVPSRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLTLHPMCFPEGLQPLQLSQMGMEGSERNRSTPLNMTATLPLHQENPLHYTSNLPNKHILPNQPSAPYPSFINNPETKPLQHQGGSSEPIRGEDILHYQQPSAIHSDANTLGGSQVVKEFESGTTVSLSFDTQTCEPCIGIGRRDESAVIIRNSEANIVVTSQLSSR* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g00609 368 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 138 202 IPR036638 GO:0046983
Phac2g00609 368 Coils Coil 180 200 - -
Phac2g00609 368 MobiDBLite consensus disorder prediction 30 63 - -
Phac2g00609 368 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 141 190 IPR011598 GO:0046983
Phac2g00609 368 SMART finulus 147 196 IPR011598 GO:0046983
Phac2g00609 368 MobiDBLite consensus disorder prediction 139 153 - -
Phac2g00609 368 MobiDBLite consensus disorder prediction 126 153 - -
Phac2g00609 368 FunFam Basic helix-loop-helix transcription factor 136 199 - -
Phac2g00609 368 Gene3D - 136 200 IPR036638 GO:0046983
Phac2g00609 368 CDD bHLH_AtPIF_like 142 204 IPR047265 -
Phac2g00609 368 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 12 282 IPR031066 -
Phac2g00609 368 Pfam Helix-loop-helix DNA-binding domain 145 191 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g00609 Phac-Chr2 3324081 3327683 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g00609 5 222 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 52.675 1.11e-51 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac2g00609 HLH 4.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g00609 - - vum:124831111 612.838