Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g00608 ATGGGCGACATGTACCACTTTGACAAGAATCTCTCTTCGCAGGACGAAATCTCACTTTTTCTGCGTCAGATTCTCCTCCGTTCATCTCCTTCTTCTTCTTCACCCCACTCCATGCCCGGATCCTGCAACTCCAACGTAGCTCACCAAAACGTCAATTCACACACTTCTTTTTCGCCCTCGCAGCTCCAACACGGCAAGATCTCGACCCTTGGTTCCACCGCCTCTTTTGTCTCGGCTTCTGCCGCTTGCGGTTCCTTCAAGGGCCAGACTGCTTCTGCTGCAAATGTGTCTTCTTCTTCTGTTTTAGTGAGCGAGAACGAGAATGATGACTATGATTGTGAAAGTGAGGAGGGTGTCGAAGCTTTCGCCGAAGAAGTTCCGACAAAACCTGTTCCTTCAAGGAGTTCATCTAAGAGATCAAGAGCTGCAGAAGTTCATAATTTGTCTGAGAAGCGAAGAAGGAGTAGGATCAACGAGAAAATGAAGGCCTTGCAAAATCTAATTCCGAATTCAAACAAGACGGATAAGGCTTCAATGCTCGATGAAGCTATTGAATACCTTAAACAGCTTCAGCTCCAAGTACAGATGCTGTCAATGCGAAATGGGTTGACTTTGCATCCTATGTGCTTTCCAGAAGGCTTGCAGCCACTGCAGTTGTCTCAGATGGGCATGGAAGGAAGTGAAAGAAACAGGTCTACCCCTTTAAACATGACAGCTACTCTGCCTCTCCACCAAGAGAACCCCTTGCACTACACATCCAATCTACCTAACAAGCACATTCTGCCAAATCAGCCATCAGCACCATATCCTTCATTTATTAACAACCCAGAAACGAAACCTCTTCAACACCAAGGAGGATCTTCTGAGGTAAGCTCATCGACTTTGTAG 888 0.4651 MGDMYHFDKNLSSQDEISLFLRQILLRSSPSSSSPHSMPGSCNSNVAHQNVNSHTSFSPSQLQHGKISTLGSTASFVSASAACGSFKGQTASAANVSSSSVLVSENENDDYDCESEEGVEAFAEEVPTKPVPSRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLTLHPMCFPEGLQPLQLSQMGMEGSERNRSTPLNMTATLPLHQENPLHYTSNLPNKHILPNQPSAPYPSFINNPETKPLQHQGGSSEVSSSTL* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g00608 295 Gene3D - 136 200 IPR036638 GO:0046983
Phac2g00608 295 MobiDBLite consensus disorder prediction 126 153 - -
Phac2g00608 295 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 12 279 IPR031066 -
Phac2g00608 295 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 138 202 IPR036638 GO:0046983
Phac2g00608 295 FunFam Basic helix-loop-helix transcription factor 136 199 - -
Phac2g00608 295 Coils Coil 180 200 - -
Phac2g00608 295 MobiDBLite consensus disorder prediction 267 295 - -
Phac2g00608 295 MobiDBLite consensus disorder prediction 30 63 - -
Phac2g00608 295 Pfam Helix-loop-helix DNA-binding domain 145 191 IPR011598 GO:0046983
Phac2g00608 295 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 141 190 IPR011598 GO:0046983
Phac2g00608 295 SMART finulus 147 196 IPR011598 GO:0046983
Phac2g00608 295 MobiDBLite consensus disorder prediction 139 153 - -
Phac2g00608 295 MobiDBLite consensus disorder prediction 247 295 - -
Phac2g00608 295 MobiDBLite consensus disorder prediction 247 261 - -
Phac2g00608 295 CDD bHLH_AtPIF_like 142 204 IPR047265 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g00608 Phac-Chr2 3324081 3327683 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g00608 5 222 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 51.852 1.43e-52 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac2g00608 HLH 3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g00608 - - vum:124831111 478.789