Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g00540 ATGAGAAGACACCGTGCTATTCATCTCTCTCATGCTCTACTGTGCACCGTTTTTTGTTGTCTTGTGACGGCTTCTGCAGTGACTGAGAAGGAGATTTTGCTTGAATTCAAAGGAAACATAACGGACGATCCACGCGCTAGCTTGAGTTCGTGGGTTTCAAGTGGGAACCCGTGCAACGATTACAAAGGTGTTTCGTGTAACTCTGAAGGTTTTGTGGAGAGAATCGTACTATGGAACACTAGCTTGGGAGGGGTGTTATCCTCGTCACTTTCGGGGTTGAAGAGATTGAGGATATTGACGTTGTTCGGGAACCGTTTCTCGGGTGATATTCCAGAAGGGTATGGTGATCTTCAGTCACTGTGGAAGATCAATTTGAGTTCCAATGCTTTATCTGGTTCGATCCCTGAGTTCATCGGTGACTTGCCTAGCATTCGGTTTCTAGATTTATCCAAGAATGGCTTCACTGGGCAGATACCTTCGGCTTTGTTTCGGTACTGCTACAAAACAAAGTTCGTTTCTCTTTCTCATAACAACCTCGCCGGTTCAATTCCTGCCTCCTTGGTGAACTGCTCTAACCTTGAAGGGTTTGATTTTTCCTTCAACAACCTTAGCGGGGTTGTCCCTTCGCGACTTTGTGGCATTCCAAGGTTGTCATATGTGTCGCTGAGAAGCAATGCCTTGTCAGGGAGCGTGCAGGAGCTCATTTCCTCATGCCAAAGTCTGGAACATTTGGATTTTGGAAGTAATAGATTCACTGATTTGGCTCCATTCAGTGTCCTTGGAATGCCAAATCTTACCTATTTCAATTTATCGTATAATGGGTTTGGAGGACATATTCCTGAGATCAGTACCTGTAGTGGGAGATTGCAAATCTTTGATGCTTCAGGGAATTTTTTGGATGGGGAGATTCCCTCCAGCATAACAAAATGCAAGAGCCTAAAGCTTTTGGCGTTGGAGTTGAATAGGCTGGAGGGGAATATCCCAGTGAATATTCAGGAATTGCGAGGACTAATAGTTTTCAAATTGGGTAATAATTCCATTGGTGGAATGATCCCCAAGGGCTTTGGCAACGTTGAGCTTCTTGAATTGCTGGATTTGCACAATCTGAACCTCGTTGGCCAAATTCCTGATGATATAAGCAATTGCAAGTTTCTTCTTGGGCTGGACTTTTCTGGCAATAAATTAGAAGGTGAGATTCCTCAGACTCTTTACAACTTGACAAATCTGAAATCCCTTAACCTACAACATAACCAGCTTAATGGAAGCATCCCCCAAAGCCTAGGAAACCTATTAAGGATTCAATACCTAGATCTGTCACATAATTCACTTTCTGGCCCAATCCCTACTTCCCTTGGAAATTTAAATAACTTGACACATTTTGATCTCTCATTCAATAATCTGTCTGGTTTCATTCCTGAGATTGCAAACATACAGCGTTTTGGGGCATCTGCATTTTCCAATAATCCTTTTCTCTGTGGTCGTCCTTTGGACACCCCTTGCTTGGTAAACGGAGCTTCATCACCTTCATCTCCTGGGAAGGCTAAAGTTCTAAGCACCTCAGCAATTGTTGCAATTGTCGCTGCAGCTGTAATTCTTGCCGGGGTTTGTTTGGTGACCATCATGAATATTATGGCACGTGATAGAGAAAAAGAAGAACCGATTATGATTGTTGAGAGCACACCACTTGGATCAACAGAATCAAATCTTATAATTGGAAAGCTGGTTCTCTTCAGCAAAAGTTTACCATCAAAATATGAAGATTGGGAGGCAGGTACCAAAACATTGCTTGATAAAGAGTCTTTGATAGGTGGTGGATCAATTGGTACAGTCTACCGAACTGATTTTGAAAGCGGGATCTCAATTGCAGTGAAGAAGCTCGAGACTATGGGAAGGATCAGAAACCAGGAGGAATTTGAGCATGAAATTGGGAGACTAGGCAACCTTCAACACCCTAATTTAGTTGCTTTTCAAGGTTATTATTGGTCCTCTTCAATGCAGTTGATTCTATCAGAGTTTGTCCCAAATGGGAATCTCTATGATAATCTACATGGGTTGGGCTATGCTGGAACCAGCACTAGTAGAGGAAATAGGGAACTATATTGGTCCAGAAGGTTTCAAATTGCAGTGGGAACCGCAAGAGCCCTTGCTTATCTCCACCATGACTGCAGACCTCCAATTCTTCATCTCAACATTAAATCCTCTAACATACTCTTAGATGACAACTATGAAGCTAAGTTGTCTGATTATGGATTAGGAAAGTTACTTCCCATTTTGGATAATTATGGTCTGACCAATTTCCACAATGCTGTGGGATATGTTGCACCAGAGTTGGCTCAAGGCCTGAGGCAGAGTGAGAAATGTGATGTTTACAGTTTTGGAGTCATTCTTTTGGAGCTGGTTACAGGGAGGAAGCCTGTGGAAAGTCCAACCACAAATGAGGTGGTGGTCTTGTGTGAATATGTAAGAGGTTTGTTAGAAACTAGTTCAGCTTCAGATTGCTTTGACAGAAATTTACTGGGCTTTACCGAGAACGAATTAATTCAGGTTATGAGATTGGGACTAATTTGTACTTCGGAGGATCCTTTAAGGAGACCAAGCATGGCTGAGGTTGTCCAGGTCCTTGAATCCATTAGAAATGGATTGGATTCCCATTAA 2655 0.426 MRRHRAIHLSHALLCTVFCCLVTASAVTEKEILLEFKGNITDDPRASLSSWVSSGNPCNDYKGVSCNSEGFVERIVLWNTSLGGVLSSSLSGLKRLRILTLFGNRFSGDIPEGYGDLQSLWKINLSSNALSGSIPEFIGDLPSIRFLDLSKNGFTGQIPSALFRYCYKTKFVSLSHNNLAGSIPASLVNCSNLEGFDFSFNNLSGVVPSRLCGIPRLSYVSLRSNALSGSVQELISSCQSLEHLDFGSNRFTDLAPFSVLGMPNLTYFNLSYNGFGGHIPEISTCSGRLQIFDASGNFLDGEIPSSITKCKSLKLLALELNRLEGNIPVNIQELRGLIVFKLGNNSIGGMIPKGFGNVELLELLDLHNLNLVGQIPDDISNCKFLLGLDFSGNKLEGEIPQTLYNLTNLKSLNLQHNQLNGSIPQSLGNLLRIQYLDLSHNSLSGPIPTSLGNLNNLTHFDLSFNNLSGFIPEIANIQRFGASAFSNNPFLCGRPLDTPCLVNGASSPSSPGKAKVLSTSAIVAIVAAAVILAGVCLVTIMNIMARDREKEEPIMIVESTPLGSTESNLIIGKLVLFSKSLPSKYEDWEAGTKTLLDKESLIGGGSIGTVYRTDFESGISIAVKKLETMGRIRNQEEFEHEIGRLGNLQHPNLVAFQGYYWSSSMQLILSEFVPNGNLYDNLHGLGYAGTSTSRGNRELYWSRRFQIAVGTARALAYLHHDCRPPILHLNIKSSNILLDDNYEAKLSDYGLGKLLPILDNYGLTNFHNAVGYVAPELAQGLRQSEKCDVYSFGVILLELVTGRKPVESPTTNEVVVLCEYVRGLLETSSASDCFDRNLLGFTENELIQVMRLGLICTSEDPLRRPSMAEVVQVLESIRNGLDSH* 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g00540 884 SMART LRR_typ_2 141 165 IPR003591 -
Phac2g00540 884 SMART LRR_typ_2 406 430 IPR003591 -
Phac2g00540 884 SMART LRR_typ_2 238 261 IPR003591 -
Phac2g00540 884 SMART LRR_typ_2 262 285 IPR003591 -
Phac2g00540 884 SMART LRR_typ_2 454 476 IPR003591 -
Phac2g00540 884 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 673 883 - -
Phac2g00540 884 CDD STKc_IRAK 602 877 - -
Phac2g00540 884 Gene3D Phosphorylase Kinase; domain 1 567 672 - -
Phac2g00540 884 Pfam Protein kinase domain 598 872 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phac2g00540 884 SUPERFAMILY Protein kinase-like (PK-like) 597 875 IPR011009 -
Phac2g00540 884 FunFam Putative LRR receptor-like serine/threonine-protein kinase 573 672 - -
Phac2g00540 884 SUPERFAMILY L domain-like 164 492 - -
Phac2g00540 884 SUPERFAMILY L domain-like 73 161 - -
Phac2g00540 884 ProSiteProfiles Protein kinase domain profile. 596 884 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phac2g00540 884 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Phac2g00540 884 Gene3D Ribonuclease Inhibitor 168 503 IPR032675 -
Phac2g00540 884 Gene3D Ribonuclease Inhibitor 26 167 IPR032675 -
Phac2g00540 884 ProSiteProfiles Leucine-rich repeat profile. 240 261 IPR001611 GO:0005515
Phac2g00540 884 Pfam Leucine rich repeat 95 153 IPR001611 GO:0005515
Phac2g00540 884 Pfam Leucine rich repeat 215 274 IPR001611 GO:0005515
Phac2g00540 884 Gene3D Transferase(Phosphotransferase) domain 1 673 883 - -
Phac2g00540 884 Pfam Leucine Rich Repeat 433 454 IPR001611 GO:0005515
Phac2g00540 884 Pfam Leucine Rich Repeat 408 430 IPR001611 GO:0005515
Phac2g00540 884 ProSiteProfiles Leucine-rich repeat profile. 408 431 IPR001611 GO:0005515
Phac2g00540 884 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g12460 26 164 - -
Phac2g00540 884 PANTHER OS05G0588300 PROTEIN 204 305 - -
Phac2g00540 884 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g12460 165 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g00540 Phac-Chr2 2699444 2708359 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g00540 25 883 Receptor kinase-like Gene Family AT1G62950 65.593 0.0 1100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Phac2g00540 Pkinase 2.4e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g00540 - - gmx:100800970 1550.41