Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g00478 ATGGCGACGACAAGGTCGTCTCCGAGCCCTTCCTCTGAGGACATCGTCGATTCGACGCCGCTTCTGGCCAATTCTGGCGGCTCCTCAGGGGAGCTCACCACAGGGCGTCGATTTGTTCGGCGGCAGCGGCTCCGGCAGGCGGCGCGGTTCCTCAGGCAGGCGAGCGGGCGCAGGATGATGCGCGAGCCGTCGATGCTGGTCCGGGAGGCGGCGGCGGAACAATTGGAGGAGAGGCAGAGCGATTGGGCGTATTCGAAGCCGGTGGTTGTTCTGGATATCGTTTGGAACTTCGCGTTCGTGATTGTAGCGGGAACCGTTATGGTTTTGAGCGCGAGCGAAGCGCCGGGGATGCCTCTGAGGTTGTGGATTTTGGGGTACGCTTTGCAATGCGTCCTTCACATGGTTTGCGTTTGCGTAGAGTATAGAAGAAGGAGGAGGAGCCAGCGCGCCACCGCGTCGGTTTCAGTGCAGGACAGAGTTGGGAGCGGCAGTGGAAATTTGAGTTCATCTTCGAGGGAGGGTTCTTCTTCTGGCTCCGTGCAGTATGTGTCGCTGGGGCAACTCGATGAGGAGGGTACTAGTGTTGCAAAGCACTTGGAATCAGCCAATACCATGTTTTCATTTGTTTGGTGGATTATTGGATTCTACTGGGTATCAGCTGGTGGTCAAGAATTAGCCCAAGATTCTCCTCAGCTTTACTGGCTATGCATAATTTTCCTGGGTTTTGATGTTTTCTTTGTTGTTTTCTGTGTTGCACTGGCGTGTATCATTGGTATCGCTGTTTGCTGTTGTCTTCCATGTATCATTGCACTTCTATACGCAGTTGCAGACCAAGAAGGAGCATCAAAGGAAGACATTGAGCAGTTGTCAAAATTTAAATTCCGGAGAATTGAAAGCAATGAGAAACATACGGGAACTATACAAGGACCTGTTGGAGGAGTAATGACTGAATGCCAGGCTGAGTCACCTATCGAACATGTTCTTGCCGAGGAGGATGCGGAATGTTGCATCTGCCTTTCCTCTTATGACGATGGGGTTGAGTTAAGAGAACTTCCTTGTGGTCACCATTTTCACTGTGTCTGTGTGGATAAATGGCTGTATATTAATGCCACCTGCCCTCTCTGCAAGTATAACATCTTAAAAAGTAGCAACATCAGTCAAGAGGAGGTGTAG 1173 0.5115 MATTRSSPSPSSEDIVDSTPLLANSGGSSGELTTGRRFVRRQRLRQAARFLRQASGRRMMREPSMLVREAAAEQLEERQSDWAYSKPVVVLDIVWNFAFVIVAGTVMVLSASEAPGMPLRLWILGYALQCVLHMVCVCVEYRRRRRSQRATASVSVQDRVGSGSGNLSSSSREGSSSGSVQYVSLGQLDEEGTSVAKHLESANTMFSFVWWIIGFYWVSAGGQELAQDSPQLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLSKFKFRRIESNEKHTGTIQGPVGGVMTECQAESPIEHVLAEEDAECCICLSSYDDGVELRELPCGHHFHCVCVDKWLYINATCPLCKYNILKSSNISQEEV* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g00478 390 SMART ring_2 335 375 IPR001841 -
Phac2g00478 390 PANTHER TARGET OF ERK KINASE MPK-1 54 381 - -
Phac2g00478 390 MobiDBLite consensus disorder prediction 152 178 - -
Phac2g00478 390 MobiDBLite consensus disorder prediction 1 33 - -
Phac2g00478 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 315 385 IPR013083 -
Phac2g00478 390 ProSiteProfiles Zinc finger RING-type profile. 335 376 IPR001841 -
Phac2g00478 390 MobiDBLite consensus disorder prediction 1 32 - -
Phac2g00478 390 FunFam E3 ubiquitin-protein ligase At1g12760 321 386 - -
Phac2g00478 390 SUPERFAMILY RING/U-box 324 382 - -
Phac2g00478 390 Pfam Ring finger domain 334 376 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g00478 Phac-Chr2 2430397 2435775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g00478 6 383 C3H Transcription Factor Family AT1G68070 48.691 1.12e-117 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g00478 - - gmx:100790497 660.218