Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g00475 ATGATGACGCCGTTACCGGTGGAGCAAACCGGTGAATCAGCGCCGGCGGACTTGCAGAGATCCATTCCGACGCCGTTTCTGACAAAGACGTACCAGCTCGTGGACGATCCCTCCGCGGATGACCTAATTTCCTGGAACGAAGATGGCACGAGTTTCATCGTTTGGCGGCCCGCGGAATTCGCACGTGATTTGCTTCCGAAGTACTTCAAACACAACAACTTTTCCAGTTTTGTCCGTCAGCTAAACACCTATGGATTTCGGAAGGTTGTCCCTGACCGTTGGGAATTCGCCAACGACTGTTTCCGGCGAGGTGAGAAAACTCTGCTTCGCGACATACAACGCCGGAAAATACTACCGGTGCCGCCAACTGCTGCACCGTCAGTAGTCACAGCCAATACTGTAACGGTGGCTGTGGCGGCACCGGCGATCAGAGCAGTGTCTCCAACGACTTCCGGCGACGAACAGGTACTATCCTCGAACTCATCTCCGATTGCTGGAAATAGTAATAATATAGTGCACCGCACCACGAGTTGCACTACTGCGCCCGAGCTGTCAGAAGAAAATGAACGTCTTAGAAAAGAGAACATGCAACTGAATCACGAGTTGAGTCAATTGAAGAGTTTGTGTAATAACATACTCGCTTTGATGACCAATTACGCTTCTGGTTTTAGCCGTCAGCAGTTAGAATCGTCCACTAGTGCTGTGAGGACAGTGCCGGTGCCGGAAGGGAAGGCTCTGGAGCTTTTGCCTGCGAAGCATGTTTCGTCGGCTGATGACGCCGTGCATGCCGGTGGCGCTGCCGGCTTCGTGCCATGTACGACGGCGAATGCGGCGGTGGCAGAGGTTCCCAAGCTGTTTGGGGTTTCTATTGGGTTGAAACGGTGTAGGACAGAGTGCGAAGCGGAACAGGAGGGAGAAGAACAGAATCAAATGCAGACGCTAGCACTAACGCAGGCACATACACAGACACAATCGTCGCAAGAACCAGATGGCGGGCCAGATGTGAAATCTGAACCGCTTGATGGGGATGAGTCGGATGATCAGGATGGTCGTTGGCTGGAGCTTGGGAAATAA 1074 0.5279 MMTPLPVEQTGESAPADLQRSIPTPFLTKTYQLVDDPSADDLISWNEDGTSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFRRGEKTLLRDIQRRKILPVPPTAAPSVVTANTVTVAVAAPAIRAVSPTTSGDEQVLSSNSSPIAGNSNNIVHRTTSCTTAPELSEENERLRKENMQLNHELSQLKSLCNNILALMTNYASGFSRQQLESSTSAVRTVPVPEGKALELLPAKHVSSADDAVHAGGAAGFVPCTTANAAVAEVPKLFGVSIGLKRCRTECEAEQEGEEQNQMQTLALTQAHTQTQSSQEPDGGPDVKSEPLDGDESDDQDGRWLELGK* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g00475 357 Coils Coil 181 208 - -
Phac2g00475 357 MobiDBLite consensus disorder prediction 149 171 - -
Phac2g00475 357 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 20 323 IPR027725 -
Phac2g00475 357 Gene3D - 19 116 IPR036388 -
Phac2g00475 357 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac2g00475 357 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
Phac2g00475 357 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac2g00475 357 MobiDBLite consensus disorder prediction 306 331 - -
Phac2g00475 357 FunFam Heat stress transcription factor B-4 18 116 - -
Phac2g00475 357 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac2g00475 357 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac2g00475 357 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac2g00475 357 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac2g00475 357 MobiDBLite consensus disorder prediction 304 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g00475 Phac-Chr2 2414577 2417518 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g00475 17 357 HSF AT4G11660 51.695 4.93e-100 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Phac2g00475 HSF_DNA-bind 7.2e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g00475 K09419 - gmx:100791020 547.74