Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phac2g00417 | ATGCTTTTGGGGTCATTACTTTATGATCAAAATATTGTCCCATTTCATCTCATGGTTCATGCTCCATGCCTGTCATTCTCAACAAAACCAAACCCCAATTTCGGTATTTCAGATCAAAATCTCACCCCTCTATTTAACGCCTCCTGCAAAACCAAACTGTCACCTCTTCTTCCCCATCTCAACACACTTCTGCTGTCACTAAAAAACATGGGCTTTCCCGTCGGCTACACAGAGTTGCTACTACCCAAGATGCTTCTGCAGCTGCTATCCCTATTGGGCCTCATCAGGAAACTCCTCACCCTCCTCTTGTGCTACATGGGCTTCCACGATTTCTTCCAACCCGACATTGCCTGGCCGGAGATCCTCCCGGAATTGCAGTCCATGTCGGCGGTGCTGATCCGGGAAATCCTGCCCGTGGTGAAGTTCTCGGAGATTTCGGCGGCGGAGGCGGCGGAGAGCTGCGCGGTGTGTCTGTACGAGTTCGAGGGAGAGGACGAGATCAGACGGCTGACAAACTGCCGCCACATATTCCACAGAGGGTGTCTGGACCGTTGGATGGGGTACGATCAAAGAACGTGCCCCCTCTGTCGGACGCCCTTCATACCCCACCACATGCAAGCTGCCTTCAATGATAGACTCTGGGCTGCTTCAGGGATCCCTCAATTTCATTACCACGATGAATGA | 684 | 0.5175 | MLLGSLLYDQNIVPFHLMVHAPCLSFSTKPNPNFGISDQNLTPLFNASCKTKLSPLLPHLNTLLLSLKNMGFPVGYTELLLPKMLLQLLSLLGLIRKLLTLLLCYMGFHDFFQPDIAWPEILPELQSMSAVLIREILPVVKFSEISAAEAAESCAVCLYEFEGEDEIRRLTNCRHIFHRGCLDRWMGYDQRTCPLCRTPFIPHHMQAAFNDRLWAASGIPQFHYHDE* | 228 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phac2g00417 | 227 | ProSiteProfiles | Zinc finger RING-type profile. | 154 | 197 | IPR001841 | - | |
| Phac2g00417 | 227 | SMART | ring_2 | 154 | 196 | IPR001841 | - | |
| Phac2g00417 | 227 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 131 | 202 | IPR013083 | - | |
| Phac2g00417 | 227 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 91 | 217 | - | - | |
| Phac2g00417 | 227 | Pfam | Ring finger domain | 153 | 197 | IPR001841 | - | |
| Phac2g00417 | 227 | SUPERFAMILY | RING/U-box | 153 | 203 | - | - | |
| Phac2g00417 | 227 | FunFam | RING-H2 finger protein ATL73 | 133 | 204 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phac2g00417 | Phac-Chr2 | 2094556 | 2096027 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Phac2g00417 | 70 | 227 | C3H Transcription Factor Family | AT1G63840 | 58.537 | 1.96e-62 | 191 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Phac2g00417 | K16281 | - | gmx:102665617 | 258.07 |