Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g00394 ATGGCGAAGGAGCTTGAGAAGAAGGCGAAGGAAGCATTCTTCGACGACGACTTCGCTCTCGCCGTCGATTTCTACTCCCAAGCCATACAACTAGATCCAAACGACGCTCATCTCTTCGCCGACAGAGCACAAGCCCATATTAAGCTCAACGCTTTCACTGAAGCAGTTTCCGATGCCAACAAAGCCATCCAGTTGAACCCTTCCTTGTCCAAGGCCTATCTCCGTAAAGGGACCGCTTGTATGAAACTAGAAGAATATCACACTGCCAAGGTAGCGCTTCAAAACGGTGCCGCTTTTGCGCAAGACGATTCAAGATTCTCCAAGTTGATTCAAGAATGTGATCGCTATATTTCAGAAGAATCAAATGGTCTTATTAGCACCGAATCGTCAAATGGTTCCCACTTGAGCAATACGAATGACGGGGTGACTAAAGAAGTTGAAGGGGACAGTTTGGTATCCCAATTCAATGAAGTCACAGTAAACGCACCAACACCAAAATACAGACATGAATACTACCAAAAGCCAGAAGAAGTGGTTGTGACAATATTTGCAAAAGGAATATCAACAAAAGATTTGGTTGTTGACTTTGGTGAACAGATTCTAAGTGTAACTATTGATGTTCCTGGCCAAGATGCCTATCATTTCCAACCTCGATTGTTTGGGAAGATAATACCCAACAACTGCAGAGTTGTGGTATTGTCAACCAAAATTGAAATTCGTCTTGCAAAAGCTGAAGCTATTAATTGGACATCTCTGGAATATAGCAAGGATGCACTACCCCCTAAAATAAACATGCCTATCGTTCAATCTGAAAGGCCTTCATACCCATCATCCAAATCAAGGGCAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGGAAAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGTGATATTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAAAGAAGGTGGAAGGCAGTCCTCCAGACGGCATGGAGCTGAAAAAATGGGAGTATTAA 1098 0.4253 MAKELEKKAKEAFFDDDFALAVDFYSQAIQLDPNDAHLFADRAQAHIKLNAFTEAVSDANKAIQLNPSLSKAYLRKGTACMKLEEYHTAKVALQNGAAFAQDDSRFSKLIQECDRYISEESNGLISTESSNGSHLSNTNDGVTKEVEGDSLVSQFNEVTVNAPTPKYRHEYYQKPEEVVVTIFAKGISTKDLVVDFGEQILSVTIDVPGQDAYHFQPRLFGKIIPNNCRVVVLSTKIEIRLAKAEAINWTSLEYSKDALPPKINMPIVQSERPSYPSSKSRAKDWDKLEAQVKKEEKEEKLDGDAALNKLFRDIYQNADEDMRRAMSKSFLESNGTVLSTDWKEVGSKKVEGSPPDGMELKKWEY* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g00394 365 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Phac2g00394 365 MobiDBLite consensus disorder prediction 345 365 - -
Phac2g00394 365 FunFam Protein SGT1 homolog 1 130 - -
Phac2g00394 365 Gene3D - 165 256 IPR008978 -
Phac2g00394 365 Gene3D Tetratricopeptide repeat domain 1 134 IPR011990 GO:0005515
Phac2g00394 365 Pfam CS domain 168 243 IPR007052 -
Phac2g00394 365 SUPERFAMILY TPR-like 2 113 IPR011990 GO:0005515
Phac2g00394 365 MobiDBLite consensus disorder prediction 124 143 - -
Phac2g00394 365 PANTHER PROTEIN SGT1 HOMOLOG 1 363 IPR044563 GO:0051087
Phac2g00394 365 Pfam SGS domain 283 363 IPR007699 -
Phac2g00394 365 SMART tpr_5 2 35 IPR019734 GO:0005515
Phac2g00394 365 SMART tpr_5 36 69 IPR019734 GO:0005515
Phac2g00394 365 SMART tpr_5 70 103 IPR019734 GO:0005515
Phac2g00394 365 FunFam Protein SGT1 homolog A 162 266 - -
Phac2g00394 365 ProSiteProfiles SGS domain profile. 274 365 IPR007699 -
Phac2g00394 365 CDD p23_CS_SGT1_like 170 253 - -
Phac2g00394 365 ProSiteProfiles CS domain profile. 164 253 IPR007052 -
Phac2g00394 365 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Phac2g00394 365 Pfam Tetratricopeptide repeat 17 56 - -
Phac2g00394 365 SUPERFAMILY HSP20-like chaperones 163 263 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g00394 Phac-Chr2 1971614 1975901 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g00394 1 112 U-box Gene Family AT3G07370 28.571 7.79e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g00394 K12795 - gmx:100784022 593.193