Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g00392 ATGGCGAAGGAGCTTGAGAAGAAGGCGAAGGAAGCATTCTTCGACGACGACTTCGCTCTCGCCGTCGATTTCTACTCCCAAGCCATACAACTAGATCCAAACGACGCTCATCTCTTCGCCGACAGAGCACAAGCCCATATTAAGCTCAACGCTTTCACTGAAGCAGTTTCCGATGCCAACAAAGCCATCCAGTTGAACCCTTCCTTGTCCAAGGCCTATCTCCGTAAAGGGACCGCTTGTATGAAACTAGAAGAATATCACACTGCCAAGGTAGCGCTTCAAAACGGTGCCGCTTTTGCGCAAGACGATTCAAGATTCTCCAAGTTGATTCAAGAATGTGATCGCTATATTTCAGAAGAATCAAATGGTCTTATTAGCACCGAATCGTCAAATGGTTCCCACTTGAGCAATACGAATGACGGGGTGACTAAAGAAGTTGAAGGGGACAGTTTGGTATCCCAATTCAATGAAGTCACAGTAAACGCACCAACACCAAAATACAGACATGAATACTACCAAAAGCCAGAAGAAGTGGTTGTGACAATATTTGCAAAAGGAATATCAACAAAAGATTTGGTTGTTGACTTTGGTGAACAGATTCTAAGTGTAACTATTGATGTTCCTGGCCAAGATGCCTATCATTTCCAACCTCGATTGTTTGGGAAGATAATACCCAACAACTGCAGAGTTGTGGTATTGTCAACCAAAATTGAAATTCGTCTTGCAAAAGCTGAAGCTATTAATTGGACATCTCTGGAATATAGCAAGGATGCACTACCCCCTAAAATAAACATGCCTATCGTTCAATCTGAAAGGCCTTCATACCCATCATCCAAATCAAGGGCAAAAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGGTTTGGAAGCTATCCCTTTCTCCCTTGGAGATACTTTAG 924 0.4286 MAKELEKKAKEAFFDDDFALAVDFYSQAIQLDPNDAHLFADRAQAHIKLNAFTEAVSDANKAIQLNPSLSKAYLRKGTACMKLEEYHTAKVALQNGAAFAQDDSRFSKLIQECDRYISEESNGLISTESSNGSHLSNTNDGVTKEVEGDSLVSQFNEVTVNAPTPKYRHEYYQKPEEVVVTIFAKGISTKDLVVDFGEQILSVTIDVPGQDAYHFQPRLFGKIIPNNCRVVVLSTKIEIRLAKAEAINWTSLEYSKDALPPKINMPIVQSERPSYPSSKSRAKDWDKLEAQVKKEVWKLSLSPLEIL* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g00392 307 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Phac2g00392 307 Gene3D Tetratricopeptide repeat domain 1 134 IPR011990 GO:0005515
Phac2g00392 307 Gene3D - 165 256 IPR008978 -
Phac2g00392 307 Pfam Tetratricopeptide repeat 17 56 - -
Phac2g00392 307 PANTHER PROTEIN SGT1 HOMOLOG 1 295 IPR044563 GO:0051087
Phac2g00392 307 FunFam Protein SGT1 homolog 1 130 - -
Phac2g00392 307 MobiDBLite consensus disorder prediction 124 143 - -
Phac2g00392 307 SMART tpr_5 2 35 IPR019734 GO:0005515
Phac2g00392 307 SMART tpr_5 36 69 IPR019734 GO:0005515
Phac2g00392 307 SMART tpr_5 70 103 IPR019734 GO:0005515
Phac2g00392 307 FunFam Protein SGT1 homolog A 162 266 - -
Phac2g00392 307 Pfam CS domain 168 243 IPR007052 -
Phac2g00392 307 SUPERFAMILY HSP20-like chaperones 163 263 IPR008978 -
Phac2g00392 307 CDD p23_CS_SGT1_like 170 253 - -
Phac2g00392 307 SUPERFAMILY TPR-like 2 113 IPR011990 GO:0005515
Phac2g00392 307 ProSiteProfiles CS domain profile. 164 253 IPR007052 -
Phac2g00392 307 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g00392 Phac-Chr2 1971614 1975901 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g00392 1 112 U-box Gene Family AT3G07370 28.571 4.16e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g00392 K12795 - gmx:100784022 462.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac2g00392 2 1971614 1975901 Phac2g00392 2 1971614 1975901 ECH