LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac2g00309	ATGGGGTGCATCTGCTCAAAAGACTCCTCAAACAAATACAGAGTTGATGAATATGAGAAAGAGAAAGAGAAAGAGAAAGAAAAGGAATCGAACAAGTCTTCAGTACAACTGGTTGCTCCTACTGTCTCAACTGCACAGTTAGATAGTAGTAATAGCAGGGATGGTTCGGTGCCCCGAATGATTCATTCATCATCACAAGCAATCAGAGGAACTGCCAAAGTGGCCTCAGAGGATAAAAGCAACCACTTAGATGCCACAAAAATCCAGCACCAGAAGTGTATGACAGTGAGTTCTGGTGTAGATGAAAAATTGCCAATGATGAGCAGAATACTTAGCGTGCAGCATATTGCAGGAGAACAAGTTGATTTGGGATGGCCTGTTTGGTTATCTTCAGTGGCAGCAGAAGCCATCAAAGGGTGGGTGCCTCGAAGGGCAGACTCTTTTGAAAAATTAGACCAAGTTGGACAAGGGGCTTATAGCACTGTGCATAAAGCTCGTGACCTTGAGACAGGTAAAATTGTGGCTTTGAAGAAGGTTCGCTTTTCAAGTGCAGATGTGGAAAGTGTTAGGTTCATGGCAAGAGAAATCTATATTATGCGTCAACTTGACCATCCTAATGTCATGAAGCTTGAGGGTCTTGTCACCTCAAGAACATCCACCAGTTTGTACCTTGTTTTTGAATACATGGAACATGACCTTGCTGGGCTAGCAACTATACATGGCTTGAAGTTAACTGAACCACAGATAAAATGTTTTATGCAGCAACTGCTTCGTGGGCTTGAACATTGCCACAGTCGTGGTGTGTTGCACCGTGACATCAAGGGTTCAAATCTTTTGGTTGACAACAATGGAAATCTCAAAATAGGAGATTTTGGTCTTTCAACAGTATATGATCCTGAAAAAAAGCAACCATTAACTAGCCGTGTTGTGACTCTGTGGTATAGAGCGCCTGAGCTTTTGCTGGGTGCTACAGAGTATGGAGATGCTATTGACTTGTGGAGTGCTGGTTGCATTCTAGCCGAATTGCTAGCGGGGAAGCCGATCATGCCTGGAAGAACAGAGGTGGAACAAATGCACAAAATTTTTAAACTTTGTGGTTCGCCATCTGAAGACTATTGGCAGAAAACAAAACTTCCTCATGCAACAAGTTTTAAGCCACAACACCCTTACAACCGCCAAGTGTCTGAAACTTTTAAAAATCTTTCTCCCCCGGCATTGGCTCTTGTTGATAAGCTCCTAACAATAGAACCAGAAGGTCGAGGATCAGCAACTTCTGCATTGGAGAGTGAGTTCTTCACTACAAACCCCTTACCCTGTGATCCCTCAAGTTTACCAAAGTTTTCACCAAGCAAGGAGTTTGATTCCAGGCGTCGAGACAAGGAAGCTACAAGGAAAAACCAGGAAGCTGTTAGAGGACGTGCACCAGCGTCTGTTATTAGGGGAGCAGGAGATACCAAGGCATTGGGTTCACCACAGTTTAATGCTCATGGAAATATATCTATGCGGAGGAAACCAAATACTTCAATGTGCCGTCAAAAATATTTATGCCAGGAGAATGGGGAACCCAATGAAAACGGTGAAGGAGGCATAGTAAGTGTACATGGTGGCTACACGCATGCTACTACAATGATGCACAACAGTCTAGCAGGATCATCCTCAGTGTGTAAGAGACCAGAACCATATTTGAACAATCAGAGGTCTCATTTGAATCAAGCAACAGCAAATTTATGTACCTCTTCCGTCAAAAAGGAACCAGACTCCTCTGCTCGTGAATCCAGCATGGGTTCTATGCCGAAGAAAAATAGGATACACTGCTCTGGACCATTGATGCGTCCGGGTGGAAACCTTGATGATATGCTTAAAGAGCATGAGAAATTAATGCAAGATGTTTTCCGTAGCGTCAAAAAGGCCAATCCGTAA	1920	0.4354	MGCICSKDSSNKYRVDEYEKEKEKEKEKESNKSSVQLVAPTVSTAQLDSSNSRDGSVPRMIHSSSQAIRGTAKVASEDKSNHLDATKIQHQKCMTVSSGVDEKLPMMSRILSVQHIAGEQVDLGWPVWLSSVAAEAIKGWVPRRADSFEKLDQVGQGAYSTVHKARDLETGKIVALKKVRFSSADVESVRFMAREIYIMRQLDHPNVMKLEGLVTSRTSTSLYLVFEYMEHDLAGLATIHGLKLTEPQIKCFMQQLLRGLEHCHSRGVLHRDIKGSNLLVDNNGNLKIGDFGLSTVYDPEKKQPLTSRVVTLWYRAPELLLGATEYGDAIDLWSAGCILAELLAGKPIMPGRTEVEQMHKIFKLCGSPSEDYWQKTKLPHATSFKPQHPYNRQVSETFKNLSPPALALVDKLLTIEPEGRGSATSALESEFFTTNPLPCDPSSLPKFSPSKEFDSRRRDKEATRKNQEAVRGRAPASVIRGAGDTKALGSPQFNAHGNISMRRKPNTSMCRQKYLCQENGEPNENGEGGIVSVHGGYTHATTMMHNSLAGSSSVCKRPEPYLNNQRSHLNQATANLCTSSVKKEPDSSARESSMGSMPKKNRIHCSGPLMRPGGNLDDMLKEHEKLMQDVFRSVKKANP*	640

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac2g00309	639	MobiDBLite	consensus disorder prediction	10	32	-	-
	Phac2g00309	639	MobiDBLite	consensus disorder prediction	434	503	-	-
	Phac2g00309	639	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	268	280	IPR008271	GO:0004672\|GO:0006468
	Phac2g00309	639	Gene3D	Transferase(Phosphotransferase) domain 1	231	472	-	-
	Phac2g00309	639	ProSiteProfiles	Protein kinase domain profile.	148	432	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac2g00309	639	CDD	STKc_CDK9_like	148	432	-	-
	Phac2g00309	639	Gene3D	Phosphorylase Kinase; domain 1	135	230	-	-
	Phac2g00309	639	FunFam	probable serine/threonine-protein kinase At1g54610	231	472	-	-
	Phac2g00309	639	MobiDBLite	consensus disorder prediction	1	74	-	-
	Phac2g00309	639	MobiDBLite	consensus disorder prediction	33	71	-	-
	Phac2g00309	639	SMART	serkin_6	148	432	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac2g00309	639	MobiDBLite	consensus disorder prediction	575	617	-	-
	Phac2g00309	639	SUPERFAMILY	Protein kinase-like (PK-like)	141	440	IPR011009	-
	Phac2g00309	639	MobiDBLite	consensus disorder prediction	450	468	-	-
	Phac2g00309	639	PANTHER	CELL DIVISION PROTEIN KINASE	146	438	-	-
	Phac2g00309	639	ProSitePatterns	Protein kinases ATP-binding region signature.	154	177	IPR017441	GO:0005524
	Phac2g00309	639	Pfam	Protein kinase domain	148	432	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac2g00309	639	FunFam	probable serine/threonine-protein kinase At1g54610	135	230	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac2g00309	Phac-Chr2	1477090	1481990	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac2g00309	140	471	Core Cell Cycle Gene Families	AT5G10270	50.144	5.58e-118	359

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Phac2g00309		Pkinase	3.4e-70	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac2g00309	K08819		-	gmx:100791743	982.245