Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g00259 ATGGATGAGGGAAAGCATAGATCGAGGAAAGAAATTCATGAGGTGAAAGATGGGGATTCTAAGAGGAGTCACCGCGACCGTGACCGTGATAGAACTGGAGAAAGGGGTAAGGATAAAAACGACGGGAGGCACAGGGATAGGGAGAAGAGGGATCGTGAGTCACGAAAACCTGAAAGAGAGAGGAGTACTGATTCTGAAGATAAGTATGATCGAGACAGGGAGAAGCGCAAAGAAAAAGATAAGGATGTGGAGAGAGAAAGAGGTCGAGAGAAGAAAAGGGACAGGGATAGGGAAGACAGGGAGAGAACAGACAGAGTAAAGGAAAAAGAGAAAGAGAGGGAAAGAAAAGAAGATAAGGAGAGGATTAGAGAGAGGGAAAGGGAAAGGAGGGATCATGAGAGAGAGAAGGAAAAGGAAAGAGAAAGGGCTAGGAGAGCACGGGAGAGGGAGAAGCGTAGAGAAGTTGATAGTGATTACAGTGATGGTGAATCTAGGGAGAGGGATAGAAAGCGGCACAGGAAGGAAGATGGTTATTACAAGAAGAGAGAGAGGGAAAGAAGTGTCAGCAAGCCAAGCAGGCAATCCGAGGAACATGAAGGAAGCCCAAGAAAAAAGAGTGTTGGAGATGATTCAGATACCAAAGATGGAGAGAGAAAACCTACCCGTGAAGAGGAGATGGAAAATGAACAAAAGAGGTTGGATGAAGAAATAGAAAAGCGGAGGAGGAGAGTTCAAGAGTGGCAAGAGCTAAGAAGGAAGAAAGAAGAAGCAGAAAGAGAGAAGCATGGTGAAGTAAGTGCTACTGAACCTGAGTCTGGAAAGACCTGGACGCTAGAAGGGGAATCTGATGACGAAGAAGGACCGGGAACAGAGAAGCAAGATACAGGTATGGATGTAGATGAAGATGACAAACCTGCTGATATGGAACCTAAGGATGTGATGGAGGTAGACACTGATAATGGGACAATTGCATCTGATTTACAGGAGGGAACTGCTGGTACACCTGAAGATGAGGAAATAGATCCATTGGATGCTTTCATGAATTCTATGGTTCTACCTGAAGTTGAAAAGCTGAACAATGCTGTGACATCAGTAATTTCTGATAAAGGTGTTGACATAAAAGCCAAAGATAAAGGGAATGAGCAAAGTCGTGGTGCACAGTCAAGAAAAGGTTCAAATAAGTCTATTGGCAGAATAATTCCCGGTGAAGAGTCTGACTCAGATTATGCTGATGATGAAGTTGAGAGGGATCCATTGGATGAGGATGATGATGAGTTCATGAAAAGAGTGAAGAAAACAAAAGCCGAGAAGCTTTCTTTAGTTGACCACTCAAAGATTGACTATGAACCATTCAAGAAAACTTTTTATATTGAAGTGAAGGAGATGTCGAAGATGACTCTAGAAGAAGCTGCAGTATACAGGAAGCAGTTGGAATTGAAGATACATGGAAAGGATGTGCCAAAGCCTATAAAATCATGGCACCAGACTGGACTTGGTAGCAAAGTTTTGGAGACAATAAAGAAGATGAACTTTGAAAAGCCGATGCCTATTCAAGCTCAGGCACTCCCTGTAATCATGAGTGGCCGAGATTGCATAGGGATTGCTAAAACTGGGTCAGGCAAAACACTTGCTTTTGTTCTGCCAATGCTGAGGCATATCAAGGATCAGCCACCAGTTGTTGCCGGAGATGGACCTATTGGGCTTATTATGGCCCCTACAAGGGAACTTGTTCAACAGATTCACAGTGATATAAAAAAATTTGCTAAGATACTAGGTCTCAGGTGCGTGCCTGTGTATGGAGGCTCCGGTGTTGCTCAACAAATTAGTGAGTTGAAACGTGGTGCTGAGATAGTGGTTTGTACTCCAGGTAGGATGATTGACATATTATGCACCAGTAGTGGAAAAATAACTAACTTGCGTAGAGTCACTTATTTGGTCATGGATGAGGCTGATCGAATGTTTGACATGGGCTTTGAACCTCAAATTGCACGAATTGTTCAGAATATTCGTCCAGACCGTCAAACAGTTCTTTTCTCAGCAACTTTCCCCCGCCAGGTTGAAATTCTGGCTCGGAAGGTTTTGAATAAACCTGTTGAAATTCAAGTTGGCGGGAGGAGTGTAGTGAACAAAGACATATTACAGCTAGTTGAGGTGAGACCAGATAATGAAAGGTTCCTTAGACTCTTAGAAATATTGGGGGAATGGTACGAGAAAGGAAAGATCCTGATATTTGTTCACTCCCAGGAGAAATGTGATAGTTTGTTCAAGGATCTGCTCAGGCATGGTTATCCATGCCTTTCTCTTCACGGGGCTAAGGACCAGACTGACCGAGAATCCACAATATCTGACTTTAAAAGCAATGTCTGCAGTTTGTTGGTTGCAACAAGTATTGCTGCCAGGGGATTAGATGTTAAGGAGCTAGAATTAGTGATCAATTTTGATGTTCCTAACCACTATGAAGATTATGTACACCGTGTTGGGCGCACTGGACGAGCTGGTCGAAAGGGTTGTGCCATTACATTTATATCTGAGGAAGAGGCAAGATATGCACCTGATCTGCTGAAAGCCTTGGAATTATCTGAGCAGACTGTTCCCAATGATCTGAAAACTCTTGCTGATAGCTTTATGGCAAAGGTGAATCAAGGACTGGAGCAAGCCCATGGGACTGGTTATGGAGGCAGTGGCTTTAAATTTAATGAAGAGGAAGATGAGGTGAGGAGAGCAGCAAAGAAAGCACAAGCCAAGGAATATGGGTTTGAAGAAGACAAGTCAGATTCCGAAGATGAAGATGAAGGTATTCGGAAGGCAGGAGGTGATATCTCACAGCATCCTGCTTTTGCTCAGATTCTTGCTGCCACTAAAGTTAATGCTCCCGCATTGCCTACTCCCATCTCTGCTGCTCAGCTGATTTCTAATGGTGGACTGCCTGTTTCTTTTCCGTCTGTACTTGGTCTTCAGACCCCTGCAGTCTTGCCCGGGACTGGGCTACCCCTTGCTGCAAATGATGGCGCAGCTCGAGCAGCTTTAGCTGCTATGAACTTGCATCGCAACATAGAAAAAATACAATCAGAAGCATTACCAGAGCATTATGAGGCTGAGTTGGAAATAAATGATTTCCCCCAGAATGCTCGCTGGAAAGTTACGCATAAGGAAACATTAGGCCCCATATCTGATTGGACTGGAGCTGCCATTACCACCAGGGGGCAGTTCTTCCCACCTGGAAAAATCCCAGGACCTGGAGAACGCAAACTCTACTTGTTCATTGAAGGTCCTACTGAGCAGTCTGTTAAGACAGCTAAAGCACAATTGAAGCGTGTTTTGGAAGACATCACAAATCAGGCTTTGCAACTTCCTGGTGGAAATCAACCGGGCAAATACTCTGTTGTATAA 3390 0.4413 MDEGKHRSRKEIHEVKDGDSKRSHRDRDRDRTGERGKDKNDGRHRDREKRDRESRKPERERSTDSEDKYDRDREKRKEKDKDVERERGREKKRDRDREDRERTDRVKEKEKERERKEDKERIRERERERRDHEREKEKERERARRAREREKRREVDSDYSDGESRERDRKRHRKEDGYYKKRERERSVSKPSRQSEEHEGSPRKKSVGDDSDTKDGERKPTREEEMENEQKRLDEEIEKRRRRVQEWQELRRKKEEAEREKHGEVSATEPESGKTWTLEGESDDEEGPGTEKQDTGMDVDEDDKPADMEPKDVMEVDTDNGTIASDLQEGTAGTPEDEEIDPLDAFMNSMVLPEVEKLNNAVTSVISDKGVDIKAKDKGNEQSRGAQSRKGSNKSIGRIIPGEESDSDYADDEVERDPLDEDDDEFMKRVKKTKAEKLSLVDHSKIDYEPFKKTFYIEVKEMSKMTLEEAAVYRKQLELKIHGKDVPKPIKSWHQTGLGSKVLETIKKMNFEKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFAKILGLRCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQIARIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDILQLVEVRPDNERFLRLLEILGEWYEKGKILIFVHSQEKCDSLFKDLLRHGYPCLSLHGAKDQTDRESTISDFKSNVCSLLVATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEEARYAPDLLKALELSEQTVPNDLKTLADSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSDSEDEDEGIRKAGGDISQHPAFAQILAATKVNAPALPTPISAAQLISNGGLPVSFPSVLGLQTPAVLPGTGLPLAANDGAARAALAAMNLHRNIEKIQSEALPEHYEAELEINDFPQNARWKVTHKETLGPISDWTGAAITTRGQFFPPGKIPGPGERKLYLFIEGPTEQSVKTAKAQLKRVLEDITNQALQLPGGNQPGKYSVV* 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g00259 1129 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 522 700 IPR014001 -
Phac2g00259 1129 CDD KH-I_AtRH42_like 1027 1128 - -
Phac2g00259 1129 Gene3D - 701 875 IPR027417 -
Phac2g00259 1129 Pfam DEAD/DEAH box helicase 516 687 IPR011545 GO:0003676|GO:0005524
Phac2g00259 1129 MobiDBLite consensus disorder prediction 366 425 - -
Phac2g00259 1129 MobiDBLite consensus disorder prediction 289 316 - -
Phac2g00259 1129 Pfam Helicase conserved C-terminal domain 725 833 IPR001650 -
Phac2g00259 1129 Gene3D - 443 700 IPR027417 -
Phac2g00259 1129 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 638 873 IPR027417 -
Phac2g00259 1129 MobiDBLite consensus disorder prediction 907 938 - -
Phac2g00259 1129 SMART helicmild6 752 833 IPR001650 -
Phac2g00259 1129 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 728 872 IPR001650 -
Phac2g00259 1129 FunFam probable ATP-dependent RNA helicase DDX17 453 703 - -
Phac2g00259 1129 MobiDBLite consensus disorder prediction 406 421 - -
Phac2g00259 1129 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 491 519 IPR014014 GO:0003724
Phac2g00259 1129 MobiDBLite consensus disorder prediction 1 268 - -
Phac2g00259 1129 Coils Coil 223 260 - -
Phac2g00259 1129 CDD SF2_C_DEAD 712 842 - -
Phac2g00259 1129 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 474 702 IPR027417 -
Phac2g00259 1129 PANTHER RNA HELICASE 436 911 - -
Phac2g00259 1129 Coils Coil 106 153 - -
Phac2g00259 1129 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 646 654 IPR000629 -
Phac2g00259 1129 SMART ultradead3 510 715 IPR014001 -
Phac2g00259 1129 MobiDBLite consensus disorder prediction 370 384 - -
Phac2g00259 1129 MobiDBLite consensus disorder prediction 907 921 - -
Phac2g00259 1129 MobiDBLite consensus disorder prediction 1 345 - -
Phac2g00259 1129 CDD DEADc_DDX46 480 701 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g00259 Phac-Chr2 1291177 1296190 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g00259 478 853 Eukaryotic Initiation Factors Gene Family AT3G19760 32.368 2.13e-57 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g00259 K12811 - gmx:100784306 1722.6