Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g00226 ATGAAGCTGAAAACATACGCTGGTCTTAGTTTCATTGCAACTCTGGCTATTATATATCATGCATTTAACAGTAGGGGTCAGTTTTATCCGGCAATGGTGTATCTCTCAACTTCCAAGATCAGCTTGGTGCTTCTTCTCAACATGGGTTTGGTCTTTATGTGTATTCTATGGCAATTAACCAAGAAGATTTTCTTGGGTTCCCTCCGTGAGGCGGAGGTTGAGAGGCTAAACGAGCAATCGTGGAGGGAGGTCATGGAAATCCTCTTTGCAATCACCATTTTTAGGCAAGACTTCTCTGTCACATTTCTTGCAATGGTCACGGCATTGTTGTTGATTAAGGCTTTGCATTGGTTGGCTCAAAAGAGAGTCGAGTACATCGAGACCACTCCTTCAGTGCCCATGTTGTCGCATGTTCGAATTGTATCTTTTATGGGGTTCCTTCTTCTCTTAGATAGCCTTTTCTTATACAGTTCTTTGAAGCATTTGATAGAAACTTGGCAGGCTTCAGTTTCACTATTCTTTTGTTTCGAGTACATGATACTGGCAACCACCACTGTGTCAATTTTTGTAAAATATATTTTCTATGTTAGTGACATGCTTATGGAGGGACAATGGGAAAAGAAACCAGTCTTCACTTTTTATCTGGAACTCATTAGGGACTTGCTTCACTTGTCTATGTATATGTGCTTCTTTCTTGTAATTTTTGTAAACTATGGTATTCCCTTGCACCTTATACGGGAGCTGTATGAGACGTTTAGGAACTTCAAAGTCCGTGTTGCAGATTACATACGTTATCGTAAAATCACTTCTAATATGAATGATCGATTTCCAGATGCAACCCCTGAAGAGCTTAATGCAAGTGATGCAACCTGCATTATCTGTCGCGAAGAGATGACTACAGCCAAGAAACTTATATGTGGACATCTTTTTCATGTTCATTGTCTCCGATCATGGCTGGAGCGGCAGCATACATGCCCCACATGCAGAGCCTTGGTTGTACCACCAGAAAATGGAACAACTGCAGGGTCGCAAGGATCACAGGCAGATGGTCAACGGCAGGGAACTGGGCCAGGCAGTGAAAGCACAGCTCAAAATGGGGCTTCGGATAATTTGAGTCGACATCAAGCCAGACTCCAAGCTGCTGCTGCTGCTGCTGCCATATATGAGAAGTCTTATGTCTACCCTTCTGGAAATTCTTTTGTATGTTCTCCTGGGTACACTCTTCACCCTACGGTGGCTGAATCTACTAACAGTAGTGGAGGGCAGACTTCTGGCGAACATACACAAAGTCAGTTTCTTACAGCTGGTGGACCAACAAATGAATCTTTTCCTCCAATGCAACATTTCCATTTTCTACCTTCCCAACCACATGCAGCCCTTGTGAATTATGGAAATGGGTTTGAAAATGATCCAAATATCCCAAGCTCTCATCTGGAAGCTCATAGAAAACTCCTTCAATGCCAGATTCAGATTCTGCAAAATCAGCTTGAGATTCTGCAGAAGACAAGGTCTGACAGAAGTGTAGACGAGGGCACATCTTCATCAGATAGCAGAGGCAAGAGTATCATTTGCTCATCTGGATCTGCTCGTGGTTATATTGAGGAGATTCAAGATGGAAAAGCATAA 1626 0.4274 MKLKTYAGLSFIATLAIIYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVFMCILWQLTKKIFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPSVPMLSHVRIVSFMGFLLLLDSLFLYSSLKHLIETWQASVSLFFCFEYMILATTTVSIFVKYIFYVSDMLMEGQWEKKPVFTFYLELIRDLLHLSMYMCFFLVIFVNYGIPLHLIRELYETFRNFKVRVADYIRYRKITSNMNDRFPDATPEELNASDATCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTTAGSQGSQADGQRQGTGPGSESTAQNGASDNLSRHQARLQAAAAAAAIYEKSYVYPSGNSFVCSPGYTLHPTVAESTNSSGGQTSGEHTQSQFLTAGGPTNESFPPMQHFHFLPSQPHAALVNYGNGFENDPNIPSSHLEAHRKLLQCQIQILQNQLEILQKTRSDRSVDEGTSSSDSRGKSIICSSGSARGYIEEIQDGKA* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g00226 541 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 263 338 - -
Phac2g00226 541 MobiDBLite consensus disorder prediction 337 374 - -
Phac2g00226 541 Coils Coil 482 502 - -
Phac2g00226 541 MobiDBLite consensus disorder prediction 413 442 - -
Phac2g00226 541 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 336 IPR013083 -
Phac2g00226 541 MobiDBLite consensus disorder prediction 336 374 - -
Phac2g00226 541 ProSiteProfiles Zinc finger RING-type profile. 291 329 IPR001841 -
Phac2g00226 541 CDD RING-H2_synoviolin 288 329 - -
Phac2g00226 541 SMART ring_2 291 328 IPR001841 -
Phac2g00226 541 Pfam Ring finger domain 290 329 IPR001841 -
Phac2g00226 541 PANTHER RING ZINC FINGER PROTEIN 1 513 - -
Phac2g00226 541 MobiDBLite consensus disorder prediction 502 524 - -
Phac2g00226 541 SUPERFAMILY RING/U-box 271 336 - -
Phac2g00226 541 MobiDBLite consensus disorder prediction 413 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g00226 Phac-Chr2 1173160 1178942 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g00226 1 522 C3H Transcription Factor Family AT3G16090 66.352 0.0 668
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g00226 K10601 - gmx:100816441 908.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac2g00226 2 1173160 1178942 Phac2g00226 2 1173160 1178942 ECH