Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g00219 ATGGGAATACAAACCCAGAAAACATTTCGAGAGGAAGAGGAGGAAGAGCTGCCATGCCGTGGAACTACTATCTCAGGTCAATCGATGTCAACTAGCAGAAGTGTTGGGTCACCGTCCAGCCGGAGTGAGCAGACAATGGCCACACCGGCTAGTGATAACACCTTTCTTAGGTTAAATAATCTTGACATACATGGTGATGATGCTGGATCACAGGGTGCAGTTGCTAGCAAGAAGAAAAAGAGGGGCCAACGCACTGTTGGTGGTGATAAGAGTGGAAGAGGTCTCCGCCAATTTAGTATGAAAGTCTGTGAGAAGGTAGAAAGCAAGGGAAGAACAACTTACAATGAGGTAGCTGATGAACTTGTAGCTGAATTTTCTGATCCAAGCAATGGTGCCTCAACTCCTGATCAGCAACAATATGATGAGAAAAACATTCGTCGAAGAGTGTATGATGCTTTGAATGTTCTCATGGCAATGGATATTATTTCTAAGGATAAAAAGGAAATACAATGGAAGGGTCTTCCTCGCACAAGTCTAAGTGATATTGAAGATCTAAAGACGGAACGTCTGGGGCTAAGGAATAGAATTGAAAAGAAAGCATCCTATTTGCAAGAGCTGGAGGACCAATACATAGGTCTTCAGAAACTTATACAACGAAATGAGCAATTATATAGCTCCGGGAATGCTCCCAATGGAGGTGTATCTTTACCCTTCATTCTGGTGCAGACACGCCCCCATGCAACTGTTGAAGTGGAAATATCAGAAGATATGCAGCTTGTGCATTTTGATTTCAATAGCACTCCCTTTGAGTTGCATGATGATAACTATGTTCTCAAGGCAATGAAATTTTGTGAGAGATCTCAGAATGATGACAAACCAGACAATCCTACAGATGGTGGGGAAGGTTCTAGCATGTCAAGTTTGTATCCTGCACAGGTTCCTAGTTCAGTTTCAAACCCTCCGACTAGACCTCCTTCATCTCCACCACTCCCTGGAATATTGAAGGCAAGAGTTAAGAACGAACACTGA 1029 0.4315 MGIQTQKTFREEEEEELPCRGTTISGQSMSTSRSVGSPSSRSEQTMATPASDNTFLRLNNLDIHGDDAGSQGAVASKKKKRGQRTVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFSDPSNGASTPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLSDIEDLKTERLGLRNRIEKKASYLQELEDQYIGLQKLIQRNEQLYSSGNAPNGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERSQNDDKPDNPTDGGEGSSMSSLYPAQVPSSVSNPPTRPPSSPPLPGILKARVKNEH* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g00219 342 SMART E2F_TDP_2 90 173 IPR003316 GO:0005667|GO:0006355
Phac2g00219 342 Pfam E2F/DP family winged-helix DNA-binding domain 93 173 IPR003316 GO:0005667|GO:0006355
Phac2g00219 342 Pfam Transcription factor DP 181 294 IPR014889 -
Phac2g00219 342 FunFam Transcription factor-like protein DPB 179 303 - -
Phac2g00219 342 MobiDBLite consensus disorder prediction 1 93 - -
Phac2g00219 342 SUPERFAMILY E2F-DP heterodimerization region 180 294 IPR037241 -
Phac2g00219 342 Gene3D - 85 178 IPR036388 -
Phac2g00219 342 SMART DP_2 180 340 IPR014889 -
Phac2g00219 342 Coils Coil 203 223 - -
Phac2g00219 342 PIRSF Txn_factor_DP 3 342 IPR015648 GO:0005667|GO:0051726
Phac2g00219 342 Gene3D Transcription factor DP 179 313 IPR038168 -
Phac2g00219 342 MobiDBLite consensus disorder prediction 317 331 - -
Phac2g00219 342 MobiDBLite consensus disorder prediction 21 58 - -
Phac2g00219 342 FunFam Transcription factor-like protein DPB 85 178 - -
Phac2g00219 342 MobiDBLite consensus disorder prediction 287 342 - -
Phac2g00219 342 SUPERFAMILY "Winged helix" DNA-binding domain 93 174 IPR036390 -
Phac2g00219 342 CDD DP_DD 178 281 IPR014889 -
Phac2g00219 342 MobiDBLite consensus disorder prediction 299 316 - -
Phac2g00219 342 PANTHER TRANSCRIPTION FACTOR DP 20 322 IPR015648 GO:0005667|GO:0051726
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g00219 Phac-Chr2 1144967 1149209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g00219 80 289 E2F-DP Transcription Factor Family AT5G02470 53.302 7.20e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Phac2g00219 DP 2.5e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g00219 K04683 - gmx:100781272 568.926