Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g00213 ATGGAGGGAGCATCGTGGAACACCACTGTTTCTGTGGCACCGTTTCTCAGCAAAACCTACGACATGGTCGATGACCCATCAACCGATTCGGTCGTGTCCTGGGGCGAAAACAACAACACCTTTGTTGTCTGGAACGTTCCCCAATTCGCCACAGACATCTTGCCCAAACATTTCAAGCACAACAACTTCTCCAGCTTCGTCAGGCAGTTGAATACTTATGGTTTTAGGAAGGTTGATCCAGATCAATGGGAATTTGCAAATGAAGGATTTTTAAGAGGGGAAAAACAACTTTTAAAAAGTATCAGTAGGCGCAAATCTGCTCAAGTAAATGGTAGTCAACAACCATCTCAAGTGCAAAAATCATCTGTTAGAGCATGTGTCGAAGTGGGGAAATTTGGGCTTGAGGAAGAGGTGGAAATACTGAAAAGGGATAAGAACGTTCTTATGCAGGAACTAGTTAGGTTGAGACAGAAACAGCAAGTGACTGATAACCAATTGCAAAATGTTGGGCAACGTGTGCAGTCAATGGAGCAGCGCCAGCAGCAAATGATGTCATTCCTAGCAAAGGCCATGCAGAGCCCTGGCTTCTTAGCTCAATTTGTGCAGCAGCAGAATGAAAGTAATAAACATATCACTGGGGGTAATAAAAAGAGGAGGCTCCACAGGCAAGAAAAGGATAATTTAGCCACCAACAGTCTCCATAGTGGTCTTGATGGACACATAGTCAAGTACCAGAGTTCCATAAACGATGCTGCAAAATCGTTGTTTTGCCAGATATTGCAAATAAACAATTCTACAGCAACACAATCATCAATTAAGAACCCTGATGTTTTTCTCATTGATGATATTCCTTCTGCCATTGCATCAGATAGCAGCAGTTCATCCACTCAGGTTTCTAATGTGACCCTTTCGACGGTTCCTCCTGTTTCTGAGCTGACAAGCATGGAAGTAGACTCCCAGTTTCCTGTCAATTGTATGCCCAGTATATCCGAGGTGCAATCTCCATTGGATTTTTGTCAAAGTCAAGGGGTGGAGACAGAAAGCAGTTTAGTGAATCATAATCTGAATGATGTGGGGGCTGGTAGTAGGAACATGGGGGAGATAGATGTCTCATCTGTTTTGGATGCGCCGCACACTGTAGAAGCCGGTTATTCTTCACCCGATGCTGACGGAATTTCCCAACTCCCAGATATCGATGATGAGTTCTGGGAGTTGTTTTTCAGGCCAAGCCCACTTACAGGAGACACAGAGGAAATTAAATTTAGCTCTCTAGGATGCGGTCTGACTGAAGACCATGGTTTGCCTTTGGAAAGGGAAAATGAGAAGAAAAATGTTGATAAGATGCAGCATGTTGACAAGCTTACTAAACAGATGGGACTTCTTGCATCAAAGTCTTAA 1398 0.4363 MEGASWNTTVSVAPFLSKTYDMVDDPSTDSVVSWGENNNTFVVWNVPQFATDILPKHFKHNNFSSFVRQLNTYGFRKVDPDQWEFANEGFLRGEKQLLKSISRRKSAQVNGSQQPSQVQKSSVRACVEVGKFGLEEEVEILKRDKNVLMQELVRLRQKQQVTDNQLQNVGQRVQSMEQRQQQMMSFLAKAMQSPGFLAQFVQQQNESNKHITGGNKKRRLHRQEKDNLATNSLHSGLDGHIVKYQSSINDAAKSLFCQILQINNSTATQSSIKNPDVFLIDDIPSAIASDSSSSSTQVSNVTLSTVPPVSELTSMEVDSQFPVNCMPSISEVQSPLDFCQSQGVETESSLVNHNLNDVGAGSRNMGEIDVSSVLDAPHTVEAGYSSPDADGISQLPDIDDEFWELFFRPSPLTGDTEEIKFSSLGCGLTEDHGLPLERENEKKNVDKMQHVDKLTKQMGLLASKS* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g00213 465 SUPERFAMILY "Winged helix" DNA-binding domain 11 104 IPR036390 -
Phac2g00213 465 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac2g00213 465 Gene3D - 7 105 IPR036388 -
Phac2g00213 465 ProSitePatterns HSF-type DNA-binding domain signature. 54 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac2g00213 465 SMART hsfneu3 11 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac2g00213 465 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac2g00213 465 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac2g00213 465 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phac2g00213 465 FunFam Heat shock transcription factor 1 8 105 - -
Phac2g00213 465 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 11 289 IPR027725 -
Phac2g00213 465 Coils Coil 131 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g00213 Phac-Chr2 1087298 1090898 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g00213 11 465 HSF AT5G16820 52.350 1.82e-138 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Phac2g00213 HSF_DNA-bind 1.2e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g00213 K09419 - gmx:100793665 685.256