Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac2g00127 ATGGAATCAGGCGTGAGATCGGGTGGTTCTGGGGTTGTTGTGAAGAGCAGAAACTCCTCGGGTTGTTTAATTGTGCGAAAGAAAGGGGATGGATTGGGTGCTACTGCTTCCTCGTCTAGGAAGCTCTATGAATCGAAGAAAAGGGCCAACATGAAAGTTTCCTTGAGTGATTCTGGATCAAGCGACGAGCTGCTGATTCCTCCTGGTAGAAGGCTTGGTCCGGAGACTATTCGAGTTTGCAATGGTTTGGTTGCCTCTGAGCGGGGTGGGAGTGAAATTAGTCGGAAAAGGGACAGAGTGGAACGAATTAGGGGTAGTGGGGAAGGTATTGCTGCGGAGAAAGGTTTGGACCCGAGGGAAAGGAAGCGTAGTAAGTTGGATGTTTATGATTTTGACGAATATGATGGAATGGGTGTGGAAAACACAAGGAGGAGGCATTTTGATGATAATGGAGTTGGTCATGGAGGAGGAAGGTTTATGGGATCAGTGCATGCTGCTAGAAGTGGCATTGATAGGGAATTCAAAGCAGGGTCAAGTGGACGAGTTCTCGATAAGAAAAAGAACTCCTATGGTGACAGGCCTAGTGGCTTGTTTCCGGTGGATGATGTTGATCACAGTAGGTTCAAGATGAACAGGGATGGGACTCGGGTACCTGTATCCTCGCAGAGGGAGAAGTTTAATTCAGATGAGTCCATCAGGGTTCAGGGGAAGAATGGCGTTTTGAAGGTAATGGTTAATAAGAAGAAGGTGCGTGGGCCATCAGAACAGTATTATGATCATCACAAGCCTGTAGAAAGCAGGCAAAGGTTGAAAACTGAAGAGCCTACCAAAAGGATAAAGACTGAAGAGACTGTCAAGAAGAATGTTCCAAGTCGTCCTTCATCATACACGGAAACAAAACCTGTTGAGAAACCAAGATTAGTCAAGAGGCCAGAGAAGAAACGGGTAACATCCAGAAAATCCTTGTCAAGCAAGGACAGTAAGGGTGATGAGGGAGATTCAGATAACAGTGATGCATCACTGAATCCAGGAATAAGAAATACTGAAACTCATAAGCCTGCAAAAGAAATAATTTCTGAGGATGAGCAGACACCTGTGCTGGAAAAACTCCCCACCACAGGAACAAAAGATGGGAAAATCAAGCGTGGTAGTGGTACAGAAAAACAGAAACTGCGAGAGCGAATAAGGGAGATGCTGCTGACTTCAGGTTGGACTATAGACTATAGACCTCGAAGGAACAGAGACTACCTGGATGCAGTTTACATCAATCCAGCAGGTACAGCCTATTGGTCCATCATCAAGGCCTATGACGCCCTTCAAAAGCAATTGAATGAAGATGCTAAGGAGGTCAAGGCCAAAGGGGATAGTTCTTCTTTTGCTCCTATTGCAGATGAGGTGCTCAGTCAGCTTACAAGGAAAACTAGAAAGAAAATGGAGAAAGAATTGAAAAAGAAGAAGAAAAAATATGACAGTGAAAGTCGTAATGAAAAAGAGCCTCAAAGAAAGAGATCTGCCAGCAACAAGTGTGATATGAATAGCACGGATAGTGACAGCAATGAGGAGAAGTTAAGCTCCTTTATAAAGCAGGGAAGTAAGTCAATGAAAAATAAAATGTCTGAAAATACTGTTACCACTGCTCGCACTAAAATCCAGAATGCTACCCATCACTCAAGTGATGGAATAGAAAAATCATTATTTGGAGGTGATCCTCATATACACGGACGGAAGAGTAAAAAACATGGAAGATGTACCTTGCTAGTTCGCAGTTCTAACAAAGGATCAAATTCGGAATCTGATGGCTTTGTCCCATATGTGGGGAAAAGGACAGTTCTTGCCTGGTTAATTGACTCTGGAACTGTAGAATTAAGTCAAAAGGTTCAGTACCGCAGACGGAAAAAAGTCCTGCTGGAGGGGTGGATCACAAGAGATGGCATTCATTGTGGCTGCTGCAGTAAGATCCTTACAGTTTCAAAGTTTGAACTTCATGCAGGAAGCAAATTGCCACAGCCATATCAAAATATATATTTGGAATCTGGTGTTTCTCTTCTACAATGCCAAATAGATGCATGGAACAGACAAGAGCATTCTGAAAAAATTGGTTTCCATTCAGTGGATATTGATGGTAATGATCCAAACGATGATACATGTGGTATATGTGGAGATGGAGGGGATTTAATCTGTTGTGATGGTTGTCCATCAACATTTCATCAGAGTTGCTTGGATATTCAAATGCTTCCTGCTGGTGAATGGCATTGTACAAATTGCACCTGTAAATTTTGTGGCATAGCCACTAGGACATCTGAAAAAGATGATGCATCTGTGTATGTCCTACGGACATGCAACTTATGTGAGAAGAAATGTATTCACTTTGACTCATTTATATTTGATGTTTCTTCAATATATCATGACTCTTGCTCTGAGGAGATGGATACCCATCCTAATAGCTTGAATACTTCAAGCCTTTCTTTTTGTGGGAAAGAGTGTAAAGAGCTTTCTGAACATTTGAAGAAATACCTTGGTACCAAGCATGAACTAGAAGCGGGTTTTTCATGGTCTCTCATTCATAGAACGGATGAAGACTCAGAGGCAGCTTGCAGGGGAATTACCCAGAGAGTTGAATGCAATTCGAAGTTGGCTATTGGACTGGCTGTGATGGATGAATGCTTTTTACCTGTTGTTGATCGGAGGAGTGGGATCAATTTAATCCGTAACGTTTTATATAATACTGGATCAAACTTTAGCCGGTTGAGCTATGGTGGATTTTATGCTGCTATTTTGGAAAGAGGGGATGAAATAATTGCTGCAGCATCTATCAGGTTGCATGGAACTAAGATAGCAGAGATGCCGTTCATTGGAACTCGCCATGTATATAGGCGCCAGGGGATGTGCCGCCGGCTCTTTTCTGCCATTGAATCGGCCCTTTGCTCTCTGAAAGTTGAAAAACTAGTTATTCCTGCAATTGCTGAACTCACACATACATGGACAACGGTTTTTGGCTTCACACATCTAGACAATTCACTCAGGCAAGAAATGAAGTCACTTAATATGATGGTCTTCCCTGGTATAGATATGTTACAGAAGCTGTTAGTTGAACAAGGAAAACGTGAGGGTTCTGAGAAAATGGGAAATGGAGGCAATGATTTTACGCCTACGAAAATGGAAAATCGGTCAGATATGGGTTCTTTAACTCCACAAGATGCTCATGGAAGTGATGATGTTAGTTCAAATCCTGCTAATGAGACGAATGATGAATGCAGTGATGCTTCTGAAGAACTAAACAACCATATTTTGGTTGAGGGGACTCTCTGTTCCAAATCTGATTCCGAGGAAATGGTGTCTGCTTCAGTTTCAGATAAATGTATTTCTCATTCTAGAACTAGTTACAGTGCACTAGAAATGAAGAATAAAGTGGTGCCTGCTGCTCCTGTTGATAAATTAAATTCTCCTTCGAAATGTCAGTCCATTTCTCCTAATGACAATTCTGTGAGTAGTCACTCAGAAGATATTCCAAACGTTCAAGCTTTGGTTCAGGAAACTTCTTCTGATCCATGTTCACCAGAAAACCTTGACAAAAAATGTCACTCATTCACTGCTATGAATTGTGATTCGTCAGAGCTTGACATTAATCCAGTGTTGGGTTCTCAAGAGGCAGGCAATACTTCACCTACTAAAGAGGTTTGTATGAATGACGCTCTTGAAGCTGTTCCTTCAAGTAATTTACCGAAAGAGAATAGAAAGGGGAATGATCAAAATATAGATGACTCCAGTTCTGCTCTCAAACTTGCTGATAAGAGTTTGTTGCAGGTAGAATCTGATTCCAAAAATGAAACTGGATGTGAAAATGAGAAGGATATAAGTGCTGTAAATGCTTCTGGCGTTAGTTCTGAGACTGTTCTGGTCTATCAGAATGACTGA 3915 0.4184 MESGVRSGGSGVVVKSRNSSGCLIVRKKGDGLGATASSSRKLYESKKRANMKVSLSDSGSSDELLIPPGRRLGPETIRVCNGLVASERGGSEISRKRDRVERIRGSGEGIAAEKGLDPRERKRSKLDVYDFDEYDGMGVENTRRRHFDDNGVGHGGGRFMGSVHAARSGIDREFKAGSSGRVLDKKKNSYGDRPSGLFPVDDVDHSRFKMNRDGTRVPVSSQREKFNSDESIRVQGKNGVLKVMVNKKKVRGPSEQYYDHHKPVESRQRLKTEEPTKRIKTEETVKKNVPSRPSSYTETKPVEKPRLVKRPEKKRVTSRKSLSSKDSKGDEGDSDNSDASLNPGIRNTETHKPAKEIISEDEQTPVLEKLPTTGTKDGKIKRGSGTEKQKLRERIREMLLTSGWTIDYRPRRNRDYLDAVYINPAGTAYWSIIKAYDALQKQLNEDAKEVKAKGDSSSFAPIADEVLSQLTRKTRKKMEKELKKKKKKYDSESRNEKEPQRKRSASNKCDMNSTDSDSNEEKLSSFIKQGSKSMKNKMSENTVTTARTKIQNATHHSSDGIEKSLFGGDPHIHGRKSKKHGRCTLLVRSSNKGSNSESDGFVPYVGKRTVLAWLIDSGTVELSQKVQYRRRKKVLLEGWITRDGIHCGCCSKILTVSKFELHAGSKLPQPYQNIYLESGVSLLQCQIDAWNRQEHSEKIGFHSVDIDGNDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPAGEWHCTNCTCKFCGIATRTSEKDDASVYVLRTCNLCEKKCIHFDSFIFDVSSIYHDSCSEEMDTHPNSLNTSSLSFCGKECKELSEHLKKYLGTKHELEAGFSWSLIHRTDEDSEAACRGITQRVECNSKLAIGLAVMDECFLPVVDRRSGINLIRNVLYNTGSNFSRLSYGGFYAAILERGDEIIAAASIRLHGTKIAEMPFIGTRHVYRRQGMCRRLFSAIESALCSLKVEKLVIPAIAELTHTWTTVFGFTHLDNSLRQEMKSLNMMVFPGIDMLQKLLVEQGKREGSEKMGNGGNDFTPTKMENRSDMGSLTPQDAHGSDDVSSNPANETNDECSDASEELNNHILVEGTLCSKSDSEEMVSASVSDKCISHSRTSYSALEMKNKVVPAAPVDKLNSPSKCQSISPNDNSVSSHSEDIPNVQALVQETSSDPCSPENLDKKCHSFTAMNCDSSELDINPVLGSQEAGNTSPTKEVCMNDALEAVPSSNLPKENRKGNDQNIDDSSSALKLADKSLLQVESDSKNETGCENEKDISAVNASGVSSETVLVYQND* 1305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac2g00127 1304 PANTHER PHD FINGER PROTEIN 12 379 1194 IPR042163 GO:0003714|GO:0045892
Phac2g00127 1304 CDD NAT_SF 925 984 - -
Phac2g00127 1304 MobiDBLite consensus disorder prediction 1044 1083 - -
Phac2g00127 1304 SMART PHD_3 715 756 IPR001965 -
Phac2g00127 1304 MobiDBLite consensus disorder prediction 484 505 - -
Phac2g00127 1304 FunFam Increased DNA methylation 1 706 758 - -
Phac2g00127 1304 ProSitePatterns Zinc finger PHD-type signature. 716 755 IPR019786 -
Phac2g00127 1304 Coils Coil 468 495 - -
Phac2g00127 1304 MobiDBLite consensus disorder prediction 506 537 - -
Phac2g00127 1304 CDD PHD2_CHD_II 716 755 - -
Phac2g00127 1304 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 916 985 IPR016181 -
Phac2g00127 1304 MobiDBLite consensus disorder prediction 248 287 - -
Phac2g00127 1304 MobiDBLite consensus disorder prediction 49 71 - -
Phac2g00127 1304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 705 797 IPR013083 -
Phac2g00127 1304 MobiDBLite consensus disorder prediction 1241 1262 - -
Phac2g00127 1304 MobiDBLite consensus disorder prediction 551 579 - -
Phac2g00127 1304 MobiDBLite consensus disorder prediction 90 119 - -
Phac2g00127 1304 Pfam Tify domain binding domain 638 688 IPR032308 -
Phac2g00127 1304 MobiDBLite consensus disorder prediction 1147 1166 - -
Phac2g00127 1304 Pfam PHD-finger 716 758 IPR019787 -
Phac2g00127 1304 MobiDBLite consensus disorder prediction 1035 1088 - -
Phac2g00127 1304 MobiDBLite consensus disorder prediction 1267 1281 - -
Phac2g00127 1304 MobiDBLite consensus disorder prediction 1235 1283 - -
Phac2g00127 1304 MobiDBLite consensus disorder prediction 243 364 - -
Phac2g00127 1304 Coils Coil 433 453 - -
Phac2g00127 1304 MobiDBLite consensus disorder prediction 349 363 - -
Phac2g00127 1304 MobiDBLite consensus disorder prediction 1142 1166 - -
Phac2g00127 1304 SUPERFAMILY FYVE/PHD zinc finger 706 761 IPR011011 -
Phac2g00127 1304 ProSiteProfiles Zinc finger PHD-type profile. 713 758 IPR019787 -
Phac2g00127 1304 MobiDBLite consensus disorder prediction 474 537 - -
Phac2g00127 1304 MobiDBLite consensus disorder prediction 317 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac2g00127 Phac-Chr2 724995 733165 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac2g00127 4 1030 PHD Transcription Factor Family AT4G14920 49.094 0.0 888
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phac2g00127 TDBD 7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac2g00127 - - gmx:102666194 2021.51